Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005100

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005099 and ABIE53_005100 are separated by 202 nucleotidesABIE53_005100 and ABIE53_005101 are separated by 99 nucleotides ABIE53_005099: ABIE53_005099 - cell division protein FtsI/penicillin-binding protein 2, at 1,347,384 to 1,348,508 _005099 ABIE53_005100: ABIE53_005100 - hypothetical protein, at 1,348,711 to 1,349,307 _005100 ABIE53_005101: ABIE53_005101 - methyl-accepting chemotaxis protein, at 1,349,407 to 1,350,948 _005101 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1347.848 kb on - strand, within ABIE53_005099at 1347.856 kb on + strand, within ABIE53_005099at 1347.856 kb on + strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.902 kb on - strand, within ABIE53_005099at 1347.908 kb on + strand, within ABIE53_005099at 1347.908 kb on + strand, within ABIE53_005099at 1347.924 kb on - strand, within ABIE53_005099at 1347.924 kb on - strand, within ABIE53_005099at 1347.940 kb on + strand, within ABIE53_005099at 1347.940 kb on + strand, within ABIE53_005099at 1348.003 kb on + strand, within ABIE53_005099at 1348.003 kb on + strand, within ABIE53_005099at 1348.004 kb on - strand, within ABIE53_005099at 1348.004 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.325 kb on - strand, within ABIE53_005099at 1348.413 kb on + strandat 1348.413 kb on + strandat 1348.414 kb on - strandat 1348.424 kb on - strandat 1348.617 kb on + strandat 1348.655 kb on + strandat 1348.868 kb on + strand, within ABIE53_005100at 1348.869 kb on - strand, within ABIE53_005100at 1348.869 kb on - strand, within ABIE53_005100at 1348.952 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1349.117 kb on + strand, within ABIE53_005100at 1349.117 kb on + strand, within ABIE53_005100at 1349.118 kb on - strand, within ABIE53_005100at 1349.118 kb on - strand, within ABIE53_005100at 1349.177 kb on + strand, within ABIE53_005100at 1349.178 kb on - strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.227 kb on + strand, within ABIE53_005100at 1349.255 kb on + strandat 1349.256 kb on - strandat 1349.446 kb on + strandat 1349.447 kb on - strandat 1349.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
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1,347,848 - ABIE53_005099 0.41 -2.9
1,347,856 + ABIE53_005099 0.42 -2.8
1,347,856 + ABIE53_005099 0.42 -0.9
1,347,857 - ABIE53_005099 0.42 -1.7
1,347,857 - ABIE53_005099 0.42 -2.5
1,347,857 - ABIE53_005099 0.42 -2.1
1,347,857 - ABIE53_005099 0.42 +0.5
1,347,902 - ABIE53_005099 0.46 -0.1
1,347,908 + ABIE53_005099 0.47 -2.9
1,347,908 + ABIE53_005099 0.47 -1.7
1,347,924 - ABIE53_005099 0.48 -2.0
1,347,924 - ABIE53_005099 0.48 +0.5
1,347,940 + ABIE53_005099 0.49 -2.6
1,347,940 + ABIE53_005099 0.49 -3.5
1,348,003 + ABIE53_005099 0.55 -3.8
1,348,003 + ABIE53_005099 0.55 -4.7
1,348,004 - ABIE53_005099 0.55 -1.1
1,348,004 - ABIE53_005099 0.55 -0.5
1,348,013 - ABIE53_005099 0.56 -4.1
1,348,013 - ABIE53_005099 0.56 -2.1
1,348,013 - ABIE53_005099 0.56 -2.0
1,348,150 + ABIE53_005099 0.68 -1.5
1,348,150 + ABIE53_005099 0.68 -1.1
1,348,150 + ABIE53_005099 0.68 -1.5
1,348,253 + ABIE53_005099 0.77 -2.1
1,348,253 + ABIE53_005099 0.77 -3.1
1,348,253 + ABIE53_005099 0.77 -1.5
1,348,254 - ABIE53_005099 0.77 +0.5
1,348,254 - ABIE53_005099 0.77 -2.2
1,348,254 - ABIE53_005099 0.77 -1.4
1,348,325 - ABIE53_005099 0.84 -1.1
1,348,413 + -0.9
1,348,413 + -0.5
1,348,414 - -0.5
1,348,424 - -3.0
1,348,617 + -2.9
1,348,655 + +0.5
1,348,868 + ABIE53_005100 0.26 -2.4
1,348,869 - ABIE53_005100 0.26 -1.4
1,348,869 - ABIE53_005100 0.26 +1.1
1,348,952 + ABIE53_005100 0.40 -2.2
1,348,976 + ABIE53_005100 0.44 -2.0
1,348,976 + ABIE53_005100 0.44 -2.6
1,348,976 + ABIE53_005100 0.44 -2.0
1,348,976 + ABIE53_005100 0.44 +0.5
1,348,976 + ABIE53_005100 0.44 -0.7
1,348,976 + ABIE53_005100 0.44 -0.8
1,348,977 - ABIE53_005100 0.45 -0.2
1,348,977 - ABIE53_005100 0.45 -1.8
1,348,977 - ABIE53_005100 0.45 -1.8
1,348,977 - ABIE53_005100 0.45 -2.5
1,349,117 + ABIE53_005100 0.68 -2.3
1,349,117 + ABIE53_005100 0.68 +1.3
1,349,118 - ABIE53_005100 0.68 -2.0
1,349,118 - ABIE53_005100 0.68 -0.1
1,349,177 + ABIE53_005100 0.78 -1.8
1,349,178 - ABIE53_005100 0.78 -1.2
1,349,199 + ABIE53_005100 0.82 -1.5
1,349,199 + ABIE53_005100 0.82 +1.3
1,349,199 + ABIE53_005100 0.82 +0.8
1,349,199 + ABIE53_005100 0.82 +0.6
1,349,210 + ABIE53_005100 0.84 +0.2
1,349,210 + ABIE53_005100 0.84 +2.0
1,349,210 + ABIE53_005100 0.84 +0.1
1,349,210 + ABIE53_005100 0.84 -1.8
1,349,210 + ABIE53_005100 0.84 -1.0
1,349,210 + ABIE53_005100 0.84 +0.2
1,349,210 + ABIE53_005100 0.84 +1.1
1,349,210 + ABIE53_005100 0.84 +0.3
1,349,211 - ABIE53_005100 0.84 +0.5
1,349,211 - ABIE53_005100 0.84 -0.8
1,349,211 - ABIE53_005100 0.84 -0.3
1,349,211 - ABIE53_005100 0.84 -1.2
1,349,211 - ABIE53_005100 0.84 -0.0
1,349,211 - ABIE53_005100 0.84 +1.3
1,349,211 - ABIE53_005100 0.84 +0.5
1,349,211 - ABIE53_005100 0.84 +0.1
1,349,227 + ABIE53_005100 0.86 -1.2
1,349,255 + +1.0
1,349,256 - +0.7
1,349,446 + +0.9
1,349,447 - -0.3
1,349,447 - +0.5

Or see this region's nucleotide sequence