Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003032

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
3,429,052	+				+0.3
3,429,053	-				-0.4
3,429,053	-				-0.9
3,429,318	+		ABIE53_003031	0.36	+0.0
3,429,318	+		ABIE53_003031	0.36	-1.0
3,429,319	-		ABIE53_003031	0.36	-1.0
3,429,370	-		ABIE53_003031	0.41	-1.2
3,429,550	+		ABIE53_003031	0.58	-1.0
3,429,550	+		ABIE53_003031	0.58	+0.0
3,429,550	+		ABIE53_003031	0.58	-0.9
3,429,588	+		ABIE53_003031	0.62	-1.0
3,429,588	+		ABIE53_003031	0.62	-1.3
3,429,588	+		ABIE53_003031	0.62	+0.0
3,429,588	+		ABIE53_003031	0.62	-2.4
3,429,588	+		ABIE53_003031	0.62	+0.3
3,429,589	-		ABIE53_003031	0.62	+0.9
3,429,655	+		ABIE53_003031	0.68	+0.0
3,429,655	+		ABIE53_003031	0.68	-2.4
3,429,655	+		ABIE53_003031	0.68	-1.5
3,429,656	-		ABIE53_003031	0.69	-1.4
3,429,656	-		ABIE53_003031	0.69	+0.4
3,429,656	-		ABIE53_003031	0.69	+0.1
3,429,656	-		ABIE53_003031	0.69	+0.0
3,429,656	-		ABIE53_003031	0.69	-1.2
3,429,657	+		ABIE53_003031	0.69	+0.0
3,429,657	+		ABIE53_003031	0.69	-0.3
3,429,657	+		ABIE53_003031	0.69	-0.3
3,429,657	+		ABIE53_003031	0.69	-1.9
3,429,657	+		ABIE53_003031	0.69	-0.3
3,429,657	+		ABIE53_003031	0.69	-0.3
3,429,657	+		ABIE53_003031	0.69	-0.4
3,429,657	+		ABIE53_003031	0.69	+2.6
3,429,657	+		ABIE53_003031	0.69	-0.7
3,429,657	+		ABIE53_003031	0.69	+0.1
3,429,657	+		ABIE53_003031	0.69	-0.7
3,429,658	-		ABIE53_003031	0.69	-0.6
3,429,658	-		ABIE53_003031	0.69	-0.7
3,429,658	-		ABIE53_003031	0.69	-1.0
3,429,658	-		ABIE53_003031	0.69	-1.7
3,429,658	-		ABIE53_003031	0.69	-1.3
3,429,861	+		ABIE53_003031	0.88	-0.9
3,429,861	+		ABIE53_003031	0.88	-0.4
3,429,861	+		ABIE53_003031	0.88	-1.7
3,429,862	-		ABIE53_003031	0.89	+0.8
3,429,862	-		ABIE53_003031	0.89	+0.9
3,429,862	-		ABIE53_003031	0.89	-2.0
3,430,047	+				-1.2
3,430,047	+				+0.4
3,430,047	+				-1.9
3,430,047	+				+0.7
3,430,047	+				+0.0
3,430,048	-				+0.6
3,430,048	-				-0.3
3,430,048	-				+0.2
3,430,048	-				-0.9
3,430,048	-				-2.0
3,430,048	-				-0.9
3,430,453	-				-1.1
3,430,453	-				-0.7
3,430,453	-				-0.7
3,430,463	-				-2.1
3,430,463	-				-0.4
3,430,463	-				-0.8
3,430,643	-		ABIE53_003033	0.20	+0.6
3,431,252	+				+2.6
3,431,253	-				-0.4
3,431,253	-				-1.7
3,431,253	-				+0.2
3,431,253	-				+0.0
3,431,253	-				+1.6
3,431,253	-				-0.5
3,431,253	-				-2.2
3,431,253	-				+0.7
3,431,253	-				+0.5
3,431,308	-				+0.5
3,431,308	-				+0.2
3,431,308	-				-0.7
3,431,308	-				+0.9
3,431,308	-				+0.0
3,431,308	-				-1.6
3,431,308	-				+0.3
3,431,308	-				+0.6
3,431,312	-				+2.6
3,431,312	-				-0.2
3,431,312	-				-1.2
3,431,312	-				-0.1
3,431,312	-				-0.1
3,431,312	-				-0.4
3,431,312	-				-0.6
3,431,312	-				+1.6
3,431,312	-				-0.4
3,431,312	-				+1.4
3,431,312	-				+0.6
3,431,312	-				+0.1
3,431,312	-				-0.4
3,431,367	+		ABIE53_003034	0.13	+1.3
3,431,367	+		ABIE53_003034	0.13	+0.0
3,431,368	-		ABIE53_003034	0.13	+1.6
3,431,368	-		ABIE53_003034	0.13	+0.2
3,431,368	-		ABIE53_003034	0.13	+0.0
3,431,368	-		ABIE53_003034	0.13	+2.6
3,431,368	-		ABIE53_003034	0.13	+2.6
3,431,368	-		ABIE53_003034	0.13	+1.6
3,431,383	+		ABIE53_003034	0.15	-0.4