Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002789

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
3,136,473	+				+1.3
3,136,473	+				+0.6
3,136,515	+				+0.8
3,136,515	+				+0.9
3,136,515	+				-0.3
3,136,515	+				+1.0
3,136,515	+				-1.8
3,136,515	+				-1.0
3,136,515	+				+0.4
3,136,515	+				-0.5
3,136,516	-				-3.0
3,136,516	-				-2.1
3,136,599	+		ABIE53_002788	0.10	-0.5
3,136,599	+		ABIE53_002788	0.10	-1.1
3,136,600	-		ABIE53_002788	0.10	-1.2
3,136,721	-		ABIE53_002788	0.25	-0.1
3,136,721	-		ABIE53_002788	0.25	-1.9
3,136,721	-		ABIE53_002788	0.25	-1.7
3,136,721	-		ABIE53_002788	0.25	-2.4
3,136,870	+		ABIE53_002788	0.44	-1.5
3,136,870	+		ABIE53_002788	0.44	-3.5
3,136,870	+		ABIE53_002788	0.44	-2.7
3,136,870	+		ABIE53_002788	0.44	+0.8
3,136,870	+		ABIE53_002788	0.44	-0.2
3,136,870	+		ABIE53_002788	0.44	+0.1
3,136,870	+		ABIE53_002788	0.44	-1.9
3,136,871	-		ABIE53_002788	0.44	-0.1
3,136,871	-		ABIE53_002788	0.44	-0.2
3,136,871	-		ABIE53_002788	0.44	+0.1
3,136,885	+		ABIE53_002788	0.45	-0.3
3,136,886	-		ABIE53_002788	0.46	-2.7
3,137,002	+		ABIE53_002788	0.60	-1.5
3,137,002	+		ABIE53_002788	0.60	-1.2
3,137,003	-		ABIE53_002788	0.60	-0.2
3,137,054	+		ABIE53_002788	0.66	-1.9
3,137,054	+		ABIE53_002788	0.66	-1.3
3,137,054	+		ABIE53_002788	0.66	+1.5
3,137,055	-		ABIE53_002788	0.66	-1.7
3,137,055	-		ABIE53_002788	0.66	-1.0
3,137,155	+		ABIE53_002788	0.79	-0.4
3,137,155	+		ABIE53_002788	0.79	-0.8
3,137,155	+		ABIE53_002788	0.79	+0.1
3,137,155	+		ABIE53_002788	0.79	+1.0
3,137,155	+		ABIE53_002788	0.79	-1.3
3,137,155	+		ABIE53_002788	0.79	-0.5
3,137,156	-		ABIE53_002788	0.79	-1.7
3,137,156	-		ABIE53_002788	0.79	-2.1
3,137,156	-		ABIE53_002788	0.79	-1.2
3,137,156	-		ABIE53_002788	0.79	+0.5
3,137,156	-		ABIE53_002788	0.79	-0.1
3,137,228	+		ABIE53_002788	0.88	-1.7
3,137,228	+		ABIE53_002788	0.88	-0.3
3,137,326	+				+0.3
3,137,326	+				-0.3
3,137,326	+				+2.5
3,137,326	+				+0.4
3,137,326	+				-2.5
3,137,326	+				+2.0
3,137,326	+				+0.6
3,137,326	+				+0.4
3,137,326	+				+0.4
3,137,326	+				-0.1
3,137,326	+				+0.3
3,137,326	+				-0.8
3,137,326	+				-0.1
3,137,326	+				-1.7
3,137,326	+				-1.5
3,137,326	+				-0.8
3,137,326	+				+0.9
3,137,326	+				-1.0
3,137,326	+				+0.4
3,137,326	+				-0.1
3,137,326	+				-0.8
3,137,326	+				-0.8
3,137,326	+				-0.5
3,137,326	+				-1.5
3,137,326	+				+0.5
3,137,326	+				+0.4
3,137,326	+				+0.3
3,137,326	+				+1.0
3,137,326	+				-0.1
3,137,326	+				-1.1
3,137,326	+				+1.3
3,137,326	+				-0.4
3,137,326	+				+0.8
3,137,326	+				+0.6
3,137,326	+				-0.1
3,137,326	+				-0.6
3,137,326	+				+1.5
3,137,326	+				-0.6
3,137,326	+				-1.5
3,137,326	+				-0.2
3,137,326	+				+0.9
3,137,326	-				-0.3
3,137,327	-				-0.1
3,137,327	-				+1.7
3,137,327	-				+0.1
3,137,327	-				+1.5
3,137,327	-				-0.3
3,137,327	-				-0.7
3,137,327	-				-1.5
3,137,327	-				-1.5
3,137,327	-				+0.0
3,137,327	-				-0.6
3,137,327	-				+0.7
3,137,327	-				+1.4
3,137,327	-				+0.7
3,137,327	-				+0.8
3,137,327	-				-0.8
3,137,327	-				-1.5
3,137,327	-				-0.7
3,137,327	-				+1.5
3,137,327	-				+2.5
3,137,327	-				+0.6
3,137,327	-				+0.5
3,137,327	-				-1.3
3,137,327	-				+0.2
3,137,327	-				-0.1
3,137,327	-				-0.5
3,137,327	-				-0.2
3,137,327	-				+0.5
3,137,327	-				-0.1
3,137,438	+				+1.1
3,137,438	+				+1.1
3,137,438	+				-0.5
3,137,439	-				-1.0
3,137,439	-				+0.2
3,137,506	+				-1.2
3,137,571	+				-2.2
3,137,571	+				-0.1
3,137,571	+				-2.0
3,137,571	+				-0.4
3,137,571	+				-1.2
3,137,572	-				-1.2
3,137,572	-				-2.9
3,137,572	-				-0.5
3,137,572	-				-1.6
3,137,572	-				-1.6
3,137,572	-				+2.1
3,137,572	-				-0.5
3,137,572	-				-2.6
3,137,698	+		ABIE53_002789	0.19	-1.1
3,137,724	+		ABIE53_002789	0.21	-2.9
3,137,724	+		ABIE53_002789	0.21	-1.8
3,137,724	+		ABIE53_002789	0.21	-1.5
3,137,724	+		ABIE53_002789	0.21	-1.1
3,137,724	+		ABIE53_002789	0.21	-1.3
3,137,724	+		ABIE53_002789	0.21	-1.3
3,137,725	-		ABIE53_002789	0.21	-0.6
3,137,725	-		ABIE53_002789	0.21	-1.0
3,137,725	-		ABIE53_002789	0.21	-1.5
3,137,725	-		ABIE53_002789	0.21	+1.2
3,137,725	-		ABIE53_002789	0.21	-1.8
3,137,748	+		ABIE53_002789	0.23	+0.5
3,137,748	+		ABIE53_002789	0.23	-2.0
3,137,748	+		ABIE53_002789	0.23	-0.5
3,137,748	+		ABIE53_002789	0.23	-1.6
3,137,748	+		ABIE53_002789	0.23	-3.5
3,137,748	+		ABIE53_002789	0.23	-2.2
3,137,748	+		ABIE53_002789	0.23	-0.8
3,137,749	-		ABIE53_002789	0.23	-1.7
3,137,749	-		ABIE53_002789	0.23	+0.0
3,137,749	-		ABIE53_002789	0.23	-0.9
3,137,749	-		ABIE53_002789	0.23	-1.8
3,137,749	-		ABIE53_002789	0.23	-0.6
3,137,749	-		ABIE53_002789	0.23	-1.5
3,137,749	-		ABIE53_002789	0.23	-1.4
3,137,757	+		ABIE53_002789	0.24	+2.9
3,137,757	+		ABIE53_002789	0.24	-1.1
3,137,794	-		ABIE53_002789	0.27	-1.0
3,137,799	+		ABIE53_002789	0.28	-1.0
3,137,800	-		ABIE53_002789	0.28	-1.5
3,137,800	-		ABIE53_002789	0.28	+0.1
3,137,800	-		ABIE53_002789	0.28	-1.6
3,137,800	-		ABIE53_002789	0.28	-0.5
3,137,949	+		ABIE53_002789	0.40	-1.5
3,137,950	-		ABIE53_002789	0.40	-1.5
3,137,953	-		ABIE53_002789	0.41	-1.5
3,138,001	+		ABIE53_002789	0.45	-1.5
3,138,001	+		ABIE53_002789	0.45	-2.2
3,138,001	+		ABIE53_002789	0.45	-0.5
3,138,002	-		ABIE53_002789	0.45	-0.6
3,138,002	-		ABIE53_002789	0.45	-0.4
3,138,187	+		ABIE53_002789	0.60	-1.8
3,138,188	-		ABIE53_002789	0.61	+0.9
3,138,225	+		ABIE53_002789	0.64	-2.3
3,138,225	+		ABIE53_002789	0.64	-0.1
3,138,225	+		ABIE53_002789	0.64	-2.4
3,138,225	+		ABIE53_002789	0.64	-1.2
3,138,225	+		ABIE53_002789	0.64	-1.9
3,138,225	+		ABIE53_002789	0.64	-2.1
3,138,225	+		ABIE53_002789	0.64	+1.5
3,138,225	+		ABIE53_002789	0.64	-2.3
3,138,226	-		ABIE53_002789	0.64	-0.8
3,138,226	-		ABIE53_002789	0.64	-1.5
3,138,226	-		ABIE53_002789	0.64	-1.7
3,138,226	-		ABIE53_002789	0.64	-1.8
3,138,226	-		ABIE53_002789	0.64	-1.5
3,138,309	+		ABIE53_002789	0.71	+0.9
3,138,309	+		ABIE53_002789	0.71	-0.1
3,138,309	+		ABIE53_002789	0.71	-2.2
3,138,309	+		ABIE53_002789	0.71	-0.5
3,138,309	+		ABIE53_002789	0.71	-0.5
3,138,309	+		ABIE53_002789	0.71	-3.7
3,138,310	-		ABIE53_002789	0.71	+1.5
3,138,310	-		ABIE53_002789	0.71	-1.7
3,138,310	-		ABIE53_002789	0.71	-2.6
3,138,310	-		ABIE53_002789	0.71	-2.6
3,138,310	-		ABIE53_002789	0.71	+0.5
3,138,352	+		ABIE53_002789	0.74	-2.8
3,138,352	+		ABIE53_002789	0.74	+0.8
3,138,352	+		ABIE53_002789	0.74	-2.3
3,138,352	+		ABIE53_002789	0.74	-1.1
3,138,352	+		ABIE53_002789	0.74	-1.6
3,138,352	+		ABIE53_002789	0.74	-2.1
3,138,352	+		ABIE53_002789	0.74	+0.5
3,138,352	+		ABIE53_002789	0.74	-2.3
3,138,352	+		ABIE53_002789	0.74	-3.0
3,138,352	+		ABIE53_002789	0.74	-1.1
3,138,352	+		ABIE53_002789	0.74	-2.6
3,138,352	+		ABIE53_002789	0.74	-0.9
3,138,352	+		ABIE53_002789	0.74	-1.1
3,138,352	+		ABIE53_002789	0.74	-1.9
3,138,352	+		ABIE53_002789	0.74	-1.3
3,138,352	+		ABIE53_002789	0.74	+0.5
3,138,353	-		ABIE53_002789	0.74	+0.1
3,138,353	-		ABIE53_002789	0.74	-2.6
3,138,353	-		ABIE53_002789	0.74	-0.2
3,138,353	-		ABIE53_002789	0.74	-2.5
3,138,353	-		ABIE53_002789	0.74	-1.6
3,138,353	-		ABIE53_002789	0.74	-0.6
3,138,353	-		ABIE53_002789	0.74	-1.7
3,138,353	-		ABIE53_002789	0.74	-0.6
3,138,353	-		ABIE53_002789	0.74	-1.9
3,138,353	-		ABIE53_002789	0.74	+0.9
3,138,354	+		ABIE53_002789	0.75	-0.9
3,138,354	+		ABIE53_002789	0.75	-0.6
3,138,354	+		ABIE53_002789	0.75	-2.3
3,138,354	+		ABIE53_002789	0.75	-1.5
3,138,354	+		ABIE53_002789	0.75	-1.7
3,138,354	+		ABIE53_002789	0.75	-1.7
3,138,354	+		ABIE53_002789	0.75	-1.2
3,138,354	+		ABIE53_002789	0.75	-0.1
3,138,354	+		ABIE53_002789	0.75	-0.8
3,138,354	+		ABIE53_002789	0.75	-1.3
3,138,354	+		ABIE53_002789	0.75	-1.0
3,138,354	+		ABIE53_002789	0.75	-0.2
3,138,354	+		ABIE53_002789	0.75	-3.3
3,138,354	+		ABIE53_002789	0.75	-1.7
3,138,354	+		ABIE53_002789	0.75	-1.8
3,138,354	+		ABIE53_002789	0.75	-1.6
3,138,354	+		ABIE53_002789	0.75	-0.5
3,138,354	+		ABIE53_002789	0.75	+0.4
3,138,354	+		ABIE53_002789	0.75	-1.1
3,138,354	+		ABIE53_002789	0.75	-1.1
3,138,354	+		ABIE53_002789	0.75	-1.1
3,138,354	+		ABIE53_002789	0.75	-2.8
3,138,354	+		ABIE53_002789	0.75	-0.8
3,138,354	+		ABIE53_002789	0.75	-1.1
3,138,355	-		ABIE53_002789	0.75	-3.2
3,138,355	-		ABIE53_002789	0.75	-2.5
3,138,355	-		ABIE53_002789	0.75	-1.4
3,138,355	-		ABIE53_002789	0.75	-1.2
3,138,355	-		ABIE53_002789	0.75	-2.5
3,138,355	-		ABIE53_002789	0.75	-2.9
3,138,355	-		ABIE53_002789	0.75	-0.3
3,138,355	-		ABIE53_002789	0.75	-3.2
3,138,355	-		ABIE53_002789	0.75	-1.0
3,138,355	-		ABIE53_002789	0.75	-2.6
3,138,355	-		ABIE53_002789	0.75	-0.1
3,138,355	-		ABIE53_002789	0.75	-1.3
3,138,355	-		ABIE53_002789	0.75	-2.6
3,138,355	-		ABIE53_002789	0.75	-1.1
3,138,630	-				-0.4
3,138,630	-				-2.0
3,138,666	+				-1.9
3,138,695	+				+0.6
3,138,696	-				-1.1
3,138,696	-				+1.0
3,138,699	-				-0.8
3,138,699	-				-0.1
3,138,731	+				-0.4
3,138,732	-				-0.8
3,138,732	-				+0.1
3,138,732	-				+0.7
3,138,732	-				-0.1
3,138,754	+				-0.5
3,138,754	+				-0.1
3,138,754	+				+0.5
3,138,754	+				+0.3
3,138,755	-				+1.3
3,138,755	-				+1.7
3,138,755	-				+0.5
3,138,755	-				-0.1
3,138,756	+				-2.5
3,138,756	+				-1.5
3,138,756	+				+0.9
3,138,757	-				-0.9
3,138,757	-				+0.9
3,138,757	-				+0.9
3,138,781	+				+0.6
3,138,781	+				-0.6
3,138,781	+				+2.2
3,138,782	-				-0.8
3,138,782	-				-1.5
3,138,782	-				+2.7
3,138,870	+				+0.5
3,138,871	-				+0.7
3,138,871	-				+0.5
3,138,871	-				+1.5
3,138,978	+				-1.1
3,138,978	+				+1.8
3,138,978	+				-2.4
3,138,979	-				-0.1
3,138,979	-				-0.5
3,138,979	-				-1.2
3,139,045	+				-0.1
3,139,045	+				+1.0
3,139,046	-				-0.3
3,139,046	-				-0.1
3,139,046	-				+0.7
3,139,046	-				-1.6
3,139,052	+				+0.1
3,139,052	+				+1.2
3,139,053	-				-2.6
3,139,053	-				-0.5
3,139,053	-				-1.8
3,139,053	-				-0.0
3,139,053	-				-0.3
3,139,053	-				-2.1
3,139,053	-				-0.3
3,139,053	-				-0.2
3,139,085	-				-1.1
3,139,085	-				+1.1
3,139,085	-				-0.1
3,139,088	+				+0.2
3,139,088	+				-0.1
3,139,088	+				-1.8
3,139,088	+				+0.5
3,139,088	+				+2.8
3,139,088	+				-2.8
3,139,088	+				+0.4
3,139,088	+				-0.3
3,139,089	-				+0.8
3,139,089	-				-0.5
3,139,089	-				+0.1
3,139,089	-				+1.1
3,139,089	-				+1.2
3,139,089	-				-0.4
3,139,089	-				-0.5
3,139,089	-				+0.2
3,139,089	-				-0.8
3,139,231	+				-1.1
3,139,237	-				-1.6
3,139,307	+				-0.8
3,139,307	+				-0.5
3,139,307	+				+1.0
3,139,308	-				-0.1
3,139,312	+				+1.0
3,139,313	-				+0.2
3,139,313	-				-0.5
3,139,337	+				+2.5
3,139,338	-				+1.5
3,139,338	-				-2.0
3,139,419	+				+0.5
3,139,419	+				+1.0