Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002539

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
2,862,213	-		ABIE53_002538	0.29	-0.6
2,862,225	-		ABIE53_002538	0.30	+3.5
2,862,345	+		ABIE53_002538	0.43	+0.4
2,862,346	-		ABIE53_002538	0.43	-1.6
2,862,346	-		ABIE53_002538	0.43	-1.0
2,862,346	-		ABIE53_002538	0.43	-1.6
2,862,938	-				+0.5
2,862,968	+				-1.8
2,862,968	+				-0.2
2,862,968	+				+1.0
2,862,969	-				-0.9
2,862,969	-				-0.4
2,863,053	+				+0.2
2,863,054	-				-0.5
2,863,054	-				-0.3
2,863,158	+		ABIE53_002539	0.19	+0.5
2,863,158	+		ABIE53_002539	0.19	-0.8
2,863,158	+		ABIE53_002539	0.19	-2.4
2,863,158	+		ABIE53_002539	0.19	-0.2
2,863,159	-		ABIE53_002539	0.19	-1.3
2,863,159	-		ABIE53_002539	0.19	+0.5
2,863,308	+		ABIE53_002539	0.37	+0.9
2,863,308	+		ABIE53_002539	0.37	-0.5
2,863,308	+		ABIE53_002539	0.37	-0.0
2,863,309	-		ABIE53_002539	0.37	+0.1
2,863,309	-		ABIE53_002539	0.37	-0.0
2,863,309	-		ABIE53_002539	0.37	+0.1
2,863,309	-		ABIE53_002539	0.37	-0.3
2,863,388	+		ABIE53_002539	0.47	+0.3
2,863,389	-		ABIE53_002539	0.47	-2.7
2,863,512	+		ABIE53_002539	0.62	-1.8
2,863,512	+		ABIE53_002539	0.62	-2.6
2,863,513	-		ABIE53_002539	0.62	+0.7
2,863,513	-		ABIE53_002539	0.62	-0.5
2,863,821	+				-0.0
2,863,821	+				+2.4
2,863,821	+				+2.4
2,863,864	+				+0.7
2,863,864	+				-0.3
2,863,865	-				-1.5
2,863,865	-				-1.8
2,863,865	-				-0.7
2,863,950	-				+1.3
2,863,950	-				-0.8
2,863,950	-				-0.4
2,863,996	+				+0.5
2,863,997	-				+2.5
2,864,275	+		ABIE53_002540	0.22	-0.7
2,864,275	+		ABIE53_002540	0.22	+1.5
2,864,275	+		ABIE53_002540	0.22	-2.6
2,864,276	-		ABIE53_002540	0.22	+0.6
2,864,276	-		ABIE53_002540	0.22	+0.4
2,864,276	-		ABIE53_002540	0.22	+0.4
2,864,276	-		ABIE53_002540	0.22	+0.3
2,864,276	-		ABIE53_002540	0.22	-1.8
2,864,334	+		ABIE53_002540	0.26	+0.4
2,864,334	+		ABIE53_002540	0.26	-2.3
2,864,334	+		ABIE53_002540	0.26	+0.8
2,864,335	-		ABIE53_002540	0.26	-0.0
2,864,335	-		ABIE53_002540	0.26	-0.5
2,864,335	-		ABIE53_002540	0.26	-0.3
2,864,335	-		ABIE53_002540	0.26	-1.1
2,864,393	-		ABIE53_002540	0.29	-0.5
2,864,393	-		ABIE53_002540	0.29	-2.0
2,864,393	-		ABIE53_002540	0.29	-0.7
2,864,393	-		ABIE53_002540	0.29	-0.3
2,864,560	+		ABIE53_002540	0.40	-0.7
2,864,561	-		ABIE53_002540	0.40	-0.0
2,864,561	-		ABIE53_002540	0.40	-1.6
2,864,561	-		ABIE53_002540	0.40	-1.0
2,864,566	+		ABIE53_002540	0.40	-0.6
2,864,566	+		ABIE53_002540	0.40	-0.2
2,864,566	+		ABIE53_002540	0.40	-0.2
2,864,566	+		ABIE53_002540	0.40	-0.5
2,864,566	+		ABIE53_002540	0.40	+0.2
2,864,567	-		ABIE53_002540	0.40	+0.0
2,864,567	-		ABIE53_002540	0.40	-1.3
2,864,567	-		ABIE53_002540	0.40	-1.5
2,864,567	-		ABIE53_002540	0.40	+0.8
2,864,567	-		ABIE53_002540	0.40	-0.3
2,864,719	+		ABIE53_002540	0.50	+1.9
2,864,720	-		ABIE53_002540	0.50	-1.6
2,864,720	-		ABIE53_002540	0.50	-0.9
2,864,720	-		ABIE53_002540	0.50	-0.3
2,864,720	-		ABIE53_002540	0.50	+2.6
2,864,720	-		ABIE53_002540	0.50	-0.5
2,864,736	+		ABIE53_002540	0.51	-1.3
2,864,736	+		ABIE53_002540	0.51	-0.5
2,864,736	+		ABIE53_002540	0.51	-1.2
2,864,736	+		ABIE53_002540	0.51	+0.5
2,864,736	+		ABIE53_002540	0.51	-1.1
2,864,737	-		ABIE53_002540	0.51	-0.9
2,864,737	-		ABIE53_002540	0.51	-0.8
2,864,737	-		ABIE53_002540	0.51	-0.5
2,864,737	-		ABIE53_002540	0.51	-0.2
2,864,737	-		ABIE53_002540	0.51	+0.1
2,864,737	-		ABIE53_002540	0.51	+0.4
2,864,767	+		ABIE53_002540	0.53	-1.3
2,864,767	+		ABIE53_002540	0.53	-0.4
2,864,767	+		ABIE53_002540	0.53	-1.1
2,864,767	+		ABIE53_002540	0.53	-0.5
2,864,767	+		ABIE53_002540	0.53	-0.8
2,864,767	+		ABIE53_002540	0.53	-0.5
2,864,767	+		ABIE53_002540	0.53	-0.0
2,864,768	-		ABIE53_002540	0.53	-0.3
2,864,768	-		ABIE53_002540	0.53	+0.9
2,864,768	-		ABIE53_002540	0.53	-0.4
2,864,768	-		ABIE53_002540	0.53	+0.0
2,864,768	-		ABIE53_002540	0.53	-1.0