Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000834 and ABIE53_000835 are separated by 159 nucleotides ABIE53_000835 and ABIE53_000836 are separated by 90 nucleotides ABIE53_000836 and ABIE53_000837 are separated by 81 nucleotides ABIE53_000837 and ABIE53_000838 are separated by 149 nucleotides
ABIE53_000834: ABIE53_000834 - LysR family hydrogen peroxide-inducible transcriptional activator, at 905,608 to 906,567
_000834
ABIE53_000835: ABIE53_000835 - hypothetical protein, at 906,727 to 906,864
_000835
ABIE53_000836: ABIE53_000836 - catalase, at 906,955 to 908,406
_000836
ABIE53_000837: ABIE53_000837 - hypothetical protein, at 908,488 to 908,649
_000837
ABIE53_000838: ABIE53_000838 - starvation-inducible DNA-binding protein, at 908,799 to 909,287
_000838
Position (kb) 906
907
908
909 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 905.990 kb on - strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.862 kb on + strand at 906.863 kb on - strand at 906.870 kb on + strand at 906.870 kb on + strand at 906.871 kb on - strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.171 kb on + strand, within ABIE53_000836 at 907.172 kb on - strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.354 kb on - strand, within ABIE53_000836 at 907.408 kb on + strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.963 kb on + strand, within ABIE53_000836 at 907.964 kb on - strand, within ABIE53_000836 at 907.964 kb on - strand, within ABIE53_000836 at 907.981 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.206 kb on + strand, within ABIE53_000836 at 908.206 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.286 kb on + strand at 908.286 kb on + strand at 908.286 kb on + strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.353 kb on + strand at 908.353 kb on + strand at 908.353 kb on + strand at 908.354 kb on - strand at 908.354 kb on - strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.405 kb on - strand at 908.405 kb on - strand at 908.416 kb on + strand at 908.416 kb on + strand at 908.417 kb on - strand at 908.417 kb on - strand at 908.463 kb on - strand at 908.463 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.472 kb on - strand at 908.472 kb on - strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.697 kb on - strand at 908.697 kb on - strand at 908.701 kb on + strand at 908.701 kb on + strand at 908.701 kb on + strand at 908.702 kb on - strand at 908.702 kb on - strand at 908.702 kb on - strand at 908.760 kb on - strand at 908.760 kb on - strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.832 kb on - strand at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.907 kb on + strand, within ABIE53_000838 at 908.907 kb on + strand, within ABIE53_000838 at 908.908 kb on - strand, within ABIE53_000838 at 908.985 kb on + strand, within ABIE53_000838 at 908.985 kb on + strand, within ABIE53_000838 at 908.986 kb on - strand, within ABIE53_000838 at 908.986 kb on - strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.062 kb on + strand, within ABIE53_000838 at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM remove 905,990 - ABIE53_000834 0.40 +0.5 906,312 + ABIE53_000834 0.73 -3.6 906,312 + ABIE53_000834 0.73 -2.6 906,313 - ABIE53_000834 0.73 -4.2 906,313 - ABIE53_000834 0.73 -1.8 906,313 - ABIE53_000834 0.73 -1.7 906,409 + ABIE53_000834 0.83 -4.4 906,409 + ABIE53_000834 0.83 -3.8 906,409 + ABIE53_000834 0.83 -0.5 906,410 - ABIE53_000834 0.84 -1.1 906,410 - ABIE53_000834 0.84 +0.2 906,410 - ABIE53_000834 0.84 -1.1 906,693 + +1.9 906,693 + -0.2 906,693 + +0.9 906,693 + -0.3 906,693 + +1.2 906,693 + +1.2 906,693 + +0.8 906,693 + +0.6 906,693 + +1.1 906,693 + +0.5 906,693 + +1.5 906,694 - -5.0 906,694 - -3.7 906,694 - -0.5 906,694 - -3.9 906,694 - -4.1 906,694 - -0.1 906,694 - -0.1 906,694 - -2.4 906,862 + -0.8 906,863 - -2.9 906,870 + +0.2 906,870 + +1.1 906,871 - -4.1 907,055 + -0.5 907,055 + -0.8 907,055 + -4.6 907,055 + -3.7 907,055 + -1.5 907,055 + -5.5 907,055 + +1.5 907,055 + -4.1 907,055 + -1.1 907,055 + -3.9 907,055 + -3.3 907,055 + -1.1 907,055 + -6.4 907,055 + -5.8 907,056 - -4.7 907,056 - -1.1 907,056 - -4.2 907,056 - -0.8 907,056 - -3.0 907,056 - -2.2 907,056 - -3.1 907,056 - -2.3 907,056 - -2.2 907,056 - -4.0 907,056 - -3.4 907,056 - -2.5 907,056 - +1.5 907,056 - -1.3 907,171 + ABIE53_000836 0.15 +1.5 907,172 - ABIE53_000836 0.15 -0.1 907,300 + ABIE53_000836 0.24 -2.2 907,300 + ABIE53_000836 0.24 -0.4 907,300 + ABIE53_000836 0.24 -3.8 907,300 + ABIE53_000836 0.24 -1.8 907,301 - ABIE53_000836 0.24 -4.9 907,301 - ABIE53_000836 0.24 -2.3 907,301 - ABIE53_000836 0.24 -2.1 907,301 - ABIE53_000836 0.24 -1.3 907,354 - ABIE53_000836 0.27 -3.8 907,408 + ABIE53_000836 0.31 -1.5 907,409 - ABIE53_000836 0.31 -3.4 907,409 - ABIE53_000836 0.31 -1.7 907,516 + ABIE53_000836 0.39 -3.0 907,516 + ABIE53_000836 0.39 -2.8 907,516 + ABIE53_000836 0.39 -0.8 907,516 + ABIE53_000836 0.39 -1.7 907,516 + ABIE53_000836 0.39 -2.2 907,516 + ABIE53_000836 0.39 -3.2 907,516 + ABIE53_000836 0.39 -2.8 907,517 - ABIE53_000836 0.39 -3.2 907,517 - ABIE53_000836 0.39 -2.3 907,517 - ABIE53_000836 0.39 -3.7 907,517 - ABIE53_000836 0.39 +0.5 907,517 - ABIE53_000836 0.39 -0.8 907,549 + ABIE53_000836 0.41 -0.5 907,549 + ABIE53_000836 0.41 -2.6 907,549 + ABIE53_000836 0.41 -3.0 907,549 + ABIE53_000836 0.41 -0.1 907,549 + ABIE53_000836 0.41 -3.1 907,550 - ABIE53_000836 0.41 -1.8 907,550 - ABIE53_000836 0.41 -1.7 907,765 + ABIE53_000836 0.56 -3.9 907,765 + ABIE53_000836 0.56 -1.7 907,813 + ABIE53_000836 0.59 -2.2 907,813 + ABIE53_000836 0.59 -1.3 907,864 + ABIE53_000836 0.63 -1.7 907,864 + ABIE53_000836 0.63 -0.5 907,865 - ABIE53_000836 0.63 -2.5 907,865 - ABIE53_000836 0.63 -2.7 907,865 - ABIE53_000836 0.63 -1.7 907,963 + ABIE53_000836 0.69 +1.5 907,964 - ABIE53_000836 0.69 -0.5 907,964 - ABIE53_000836 0.69 -6.0 907,981 + ABIE53_000836 0.71 -2.4 908,101 + ABIE53_000836 0.79 -1.3 908,101 + ABIE53_000836 0.79 -2.6 908,101 + ABIE53_000836 0.79 -4.5 908,101 + ABIE53_000836 0.79 -3.3 908,101 + ABIE53_000836 0.79 -2.1 908,101 + ABIE53_000836 0.79 -2.8 908,101 + ABIE53_000836 0.79 -4.6 908,101 + ABIE53_000836 0.79 -4.2 908,101 + ABIE53_000836 0.79 -1.8 908,101 + ABIE53_000836 0.79 -2.0 908,101 + ABIE53_000836 0.79 -0.1 908,101 + ABIE53_000836 0.79 -4.0 908,101 + ABIE53_000836 0.79 -0.8 908,102 - ABIE53_000836 0.79 -2.5 908,102 - ABIE53_000836 0.79 +0.5 908,102 - ABIE53_000836 0.79 -3.7 908,102 - ABIE53_000836 0.79 +0.5 908,102 - ABIE53_000836 0.79 -4.5 908,102 - ABIE53_000836 0.79 +0.5 908,102 - ABIE53_000836 0.79 -4.3 908,102 - ABIE53_000836 0.79 -4.0 908,102 - ABIE53_000836 0.79 +0.5 908,102 - ABIE53_000836 0.79 -1.3 908,102 - ABIE53_000836 0.79 -2.7 908,206 + ABIE53_000836 0.86 -3.7 908,206 + ABIE53_000836 0.86 -2.1 908,209 + ABIE53_000836 0.86 -3.4 908,209 + ABIE53_000836 0.86 -2.7 908,209 + ABIE53_000836 0.86 -3.4 908,210 - ABIE53_000836 0.86 -4.2 908,210 - ABIE53_000836 0.86 -1.7 908,210 - ABIE53_000836 0.86 -2.9 908,210 - ABIE53_000836 0.86 -3.4 908,210 - ABIE53_000836 0.86 -2.2 908,286 + -1.8 908,286 + -4.0 908,286 + -3.8 908,287 - -1.3 908,287 - -1.1 908,287 - -3.5 908,287 - -2.5 908,287 - -2.5 908,287 - -2.0 908,287 - -2.6 908,353 + -1.5 908,353 + -2.7 908,353 + -0.5 908,354 - -3.4 908,354 - -3.4 908,404 + +1.5 908,404 + -0.0 908,404 + +0.7 908,404 + -0.5 908,404 + +1.1 908,405 - -1.5 908,405 - -0.8 908,416 + -2.3 908,416 + -1.3 908,417 - -1.4 908,417 - -2.3 908,463 - +1.5 908,463 - -2.5 908,469 - -0.1 908,469 - +0.2 908,469 - -0.3 908,471 + +0.8 908,471 + +2.4 908,471 + +1.2 908,471 + +1.7 908,471 + +1.5 908,471 + +1.0 908,471 + +1.5 908,471 + -0.1 908,472 - +0.3 908,472 - -1.5 908,696 + +0.8 908,696 + +1.6 908,696 + +2.6 908,696 + -0.1 908,696 + +1.0 908,696 + +1.8 908,696 + +2.6 908,697 - -2.0 908,697 - -1.1 908,701 + +0.2 908,701 + +0.8 908,701 + -0.7 908,702 - -0.9 908,702 - -0.5 908,702 - -3.8 908,760 - -0.5 908,760 - -2.6 908,777 + -0.1 908,777 + +1.8 908,777 + +0.7 908,777 + +1.5 908,778 - -1.1 908,778 - -0.8 908,778 - -2.3 908,778 - -1.6 908,818 + -0.5 908,818 + -1.0 908,818 + -3.7 908,818 + -1.5 908,818 + -1.7 908,818 + -0.8 908,819 - -3.4 908,819 - -2.0 908,819 - -0.5 908,819 - -2.8 908,832 - -2.5 908,898 + ABIE53_000838 0.20 -2.8 908,898 + ABIE53_000838 0.20 -1.8 908,898 + ABIE53_000838 0.20 -2.8 908,898 + ABIE53_000838 0.20 -0.5 908,898 + ABIE53_000838 0.20 -4.8 908,898 + ABIE53_000838 0.20 -1.6 908,898 + ABIE53_000838 0.20 -1.1 908,898 + ABIE53_000838 0.20 -3.3 908,898 + ABIE53_000838 0.20 -0.1 908,899 - ABIE53_000838 0.20 +0.5 908,899 - ABIE53_000838 0.20 -1.3 908,899 - ABIE53_000838 0.20 -2.9 908,899 - ABIE53_000838 0.20 +0.5 908,899 - ABIE53_000838 0.20 -5.5 908,907 + ABIE53_000838 0.22 -4.1 908,907 + ABIE53_000838 0.22 -0.8 908,908 - ABIE53_000838 0.22 -3.9 908,985 + ABIE53_000838 0.38 -5.3 908,985 + ABIE53_000838 0.38 -0.3 908,986 - ABIE53_000838 0.38 -3.2 908,986 - ABIE53_000838 0.38 -1.5 909,060 + ABIE53_000838 0.53 -1.8 909,060 + ABIE53_000838 0.53 -2.3 909,060 + ABIE53_000838 0.53 -3.0 909,060 + ABIE53_000838 0.53 -4.2 909,060 + ABIE53_000838 0.53 -1.5 909,061 - ABIE53_000838 0.54 -2.9 909,061 - ABIE53_000838 0.54 -1.5 909,061 - ABIE53_000838 0.54 -2.0 909,061 - ABIE53_000838 0.54 -1.7 909,061 - ABIE53_000838 0.54 -2.1 909,061 - ABIE53_000838 0.54 -2.8 909,062 + ABIE53_000838 0.54 -2.3 909,349 + -2.4 909,349 + -0.5 909,349 + -2.0 909,349 + -2.9 909,349 + -0.8 909,349 + -1.1 909,349 + -1.3 909,349 + -2.0 909,349 + +0.6 909,350 - +0.5 909,350 - -4.2 909,350 - -3.3 909,350 - -2.6 909,350 - -3.0
Or see this region's nucleotide sequence