Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000687 and ABIE53_000688 are separated by 364 nucleotides ABIE53_000688 and ABIE53_000689 are separated by 56 nucleotides
ABIE53_000687: ABIE53_000687 - DNA-binding MarR family transcriptional regulator/GNAT superfamily N-acetyltransferase, at 741,259 to 742,185
_000687
ABIE53_000688: ABIE53_000688 - GntR family transcriptional regulator, at 742,550 to 743,284
_000688
ABIE53_000689: ABIE53_000689 - N-acetylglucosamine-6-phosphate deacetylase, at 743,341 to 744,444
_000689
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 741.588 kb on + strand, within ABIE53_000687 at 741.589 kb on - strand, within ABIE53_000687 at 741.605 kb on + strand, within ABIE53_000687 at 741.605 kb on + strand, within ABIE53_000687 at 741.606 kb on - strand, within ABIE53_000687 at 741.656 kb on + strand, within ABIE53_000687 at 741.656 kb on + strand, within ABIE53_000687 at 741.656 kb on + strand, within ABIE53_000687 at 741.657 kb on - strand, within ABIE53_000687 at 741.657 kb on - strand, within ABIE53_000687 at 741.657 kb on - strand, within ABIE53_000687 at 741.657 kb on - strand, within ABIE53_000687 at 741.657 kb on - strand, within ABIE53_000687 at 741.983 kb on + strand, within ABIE53_000687 at 742.015 kb on + strand, within ABIE53_000687 at 742.015 kb on + strand, within ABIE53_000687 at 742.016 kb on - strand, within ABIE53_000687 at 742.117 kb on - strand at 742.127 kb on + strand at 742.128 kb on - strand at 742.205 kb on + strand at 742.216 kb on + strand at 742.216 kb on + strand at 742.216 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.222 kb on + strand at 742.223 kb on - strand at 742.223 kb on - strand at 742.223 kb on - strand at 742.223 kb on - strand at 742.223 kb on - strand at 742.223 kb on - strand at 742.224 kb on + strand at 742.224 kb on + strand at 742.224 kb on + strand at 742.224 kb on + strand at 742.225 kb on - strand at 742.225 kb on - strand at 742.364 kb on + strand at 742.384 kb on + strand at 742.384 kb on + strand at 742.385 kb on - strand at 742.425 kb on + strand at 742.426 kb on - strand at 742.460 kb on + strand at 742.460 kb on + strand at 742.460 kb on + strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.462 kb on + strand at 742.485 kb on - strand at 742.485 kb on - strand at 742.485 kb on - strand at 742.495 kb on + strand at 742.495 kb on + strand at 742.496 kb on - strand at 742.496 kb on - strand at 742.497 kb on + strand at 742.498 kb on - strand at 742.498 kb on - strand at 742.604 kb on + strand at 742.604 kb on + strand at 742.604 kb on + strand at 742.605 kb on - strand at 742.605 kb on - strand at 742.605 kb on - strand at 742.605 kb on - strand at 742.892 kb on - strand, within ABIE53_000688 at 743.060 kb on + strand, within ABIE53_000688 at 743.060 kb on + strand, within ABIE53_000688 at 743.060 kb on + strand, within ABIE53_000688 at 743.060 kb on + strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.061 kb on - strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.062 kb on + strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.063 kb on - strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.066 kb on + strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.067 kb on - strand, within ABIE53_000688 at 743.199 kb on - strand, within ABIE53_000688 at 743.199 kb on - strand, within ABIE53_000688 at 743.199 kb on - strand, within ABIE53_000688 at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.237 kb on + strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.238 kb on - strand at 743.252 kb on + strand at 743.253 kb on - strand at 743.253 kb on - strand at 743.253 kb on - strand at 743.253 kb on - strand at 743.255 kb on + strand at 743.282 kb on + strand at 743.282 kb on + strand at 743.282 kb on + strand at 743.283 kb on - strand at 743.283 kb on - strand at 743.317 kb on + strand at 743.318 kb on - strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.358 kb on - strand at 743.461 kb on + strand, within ABIE53_000689 at 743.461 kb on + strand, within ABIE53_000689 at 743.461 kb on + strand, within ABIE53_000689 at 743.461 kb on + strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.462 kb on - strand, within ABIE53_000689 at 743.706 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.707 kb on + strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.708 kb on - strand, within ABIE53_000689 at 743.779 kb on + strand, within ABIE53_000689 at 743.779 kb on + strand, within ABIE53_000689 at 743.779 kb on + strand, within ABIE53_000689 at 743.779 kb on + strand, within ABIE53_000689 at 743.779 kb on + strand, within ABIE53_000689 at 743.780 kb on - strand, within ABIE53_000689 at 743.780 kb on - strand, within ABIE53_000689 at 743.780 kb on - strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.902 kb on + strand, within ABIE53_000689 at 743.903 kb on - strand, within ABIE53_000689 at 743.903 kb on - strand, within ABIE53_000689 at 743.903 kb on - strand, within ABIE53_000689 at 743.903 kb on - strand, within ABIE53_000689 at 743.903 kb on - strand, within ABIE53_000689 at 744.103 kb on + strand, within ABIE53_000689 at 744.103 kb on + strand, within ABIE53_000689 at 744.104 kb on - strand, within ABIE53_000689 at 744.210 kb on + strand, within ABIE53_000689 at 744.211 kb on - strand, within ABIE53_000689 at 744.211 kb on - strand, within ABIE53_000689
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM remove 741,588 + ABIE53_000687 0.35 -0.5 741,589 - ABIE53_000687 0.36 +0.7 741,605 + ABIE53_000687 0.37 +1.2 741,605 + ABIE53_000687 0.37 -0.5 741,606 - ABIE53_000687 0.37 -0.2 741,656 + ABIE53_000687 0.43 -1.3 741,656 + ABIE53_000687 0.43 +1.1 741,656 + ABIE53_000687 0.43 -1.1 741,657 - ABIE53_000687 0.43 +1.6 741,657 - ABIE53_000687 0.43 +0.7 741,657 - ABIE53_000687 0.43 -0.5 741,657 - ABIE53_000687 0.43 -0.4 741,657 - ABIE53_000687 0.43 -2.1 741,983 + ABIE53_000687 0.78 +0.8 742,015 + ABIE53_000687 0.82 +0.1 742,015 + ABIE53_000687 0.82 +1.7 742,016 - ABIE53_000687 0.82 +0.6 742,117 - +0.7 742,127 + +1.1 742,128 - +0.4 742,205 + +0.9 742,216 + -2.1 742,216 + +0.9 742,216 + +0.5 742,222 + +0.4 742,222 + -0.0 742,222 + +2.3 742,222 + +1.3 742,222 + +0.6 742,222 + +1.9 742,222 + +2.8 742,222 + +0.5 742,222 + +0.6 742,222 + +1.6 742,223 - +1.5 742,223 - -1.6 742,223 - +1.5 742,223 - -0.4 742,223 - +0.3 742,223 - -0.0 742,224 + +0.3 742,224 + +0.2 742,224 + +1.1 742,224 + +0.5 742,225 - -1.5 742,225 - -3.0 742,364 + +1.1 742,384 + +1.9 742,384 + +1.1 742,385 - -0.5 742,425 + +0.7 742,426 - -1.0 742,460 + +0.9 742,460 + +0.1 742,460 + -0.3 742,461 - +1.6 742,461 - +0.3 742,461 - -1.7 742,461 - -1.1 742,461 - -0.2 742,462 + -1.4 742,485 - -0.1 742,485 - +0.3 742,485 - -1.5 742,495 + +0.2 742,495 + +1.6 742,496 - +0.9 742,496 - +0.6 742,497 + -0.3 742,498 - +1.1 742,498 - -0.3 742,604 + +0.7 742,604 + +1.4 742,604 + +1.5 742,605 - +0.8 742,605 - +0.9 742,605 - +0.6 742,605 - -2.7 742,892 - ABIE53_000688 0.47 +0.2 743,060 + ABIE53_000688 0.69 -0.5 743,060 + ABIE53_000688 0.69 +0.3 743,060 + ABIE53_000688 0.69 +1.5 743,060 + ABIE53_000688 0.69 +2.7 743,061 - ABIE53_000688 0.70 -1.1 743,061 - ABIE53_000688 0.70 -1.8 743,061 - ABIE53_000688 0.70 -1.3 743,061 - ABIE53_000688 0.70 +0.8 743,061 - ABIE53_000688 0.70 -0.1 743,061 - ABIE53_000688 0.70 -1.5 743,062 + ABIE53_000688 0.70 +1.6 743,062 + ABIE53_000688 0.70 -0.7 743,062 + ABIE53_000688 0.70 +1.6 743,062 + ABIE53_000688 0.70 +0.1 743,062 + ABIE53_000688 0.70 +0.7 743,062 + ABIE53_000688 0.70 +2.4 743,062 + ABIE53_000688 0.70 -1.7 743,062 + ABIE53_000688 0.70 +1.1 743,062 + ABIE53_000688 0.70 +1.9 743,062 + ABIE53_000688 0.70 +1.8 743,062 + ABIE53_000688 0.70 +1.0 743,062 + ABIE53_000688 0.70 +0.6 743,062 + ABIE53_000688 0.70 +1.1 743,062 + ABIE53_000688 0.70 +0.7 743,062 + ABIE53_000688 0.70 +1.7 743,062 + ABIE53_000688 0.70 +1.1 743,062 + ABIE53_000688 0.70 +1.7 743,062 + ABIE53_000688 0.70 +1.1 743,063 - ABIE53_000688 0.70 +0.3 743,063 - ABIE53_000688 0.70 -0.1 743,063 - ABIE53_000688 0.70 +1.5 743,063 - ABIE53_000688 0.70 +0.7 743,063 - ABIE53_000688 0.70 -0.2 743,063 - ABIE53_000688 0.70 +0.8 743,063 - ABIE53_000688 0.70 +0.4 743,063 - ABIE53_000688 0.70 +0.0 743,063 - ABIE53_000688 0.70 -1.7 743,063 - ABIE53_000688 0.70 -1.1 743,063 - ABIE53_000688 0.70 +0.2 743,063 - ABIE53_000688 0.70 -0.4 743,063 - ABIE53_000688 0.70 -0.7 743,063 - ABIE53_000688 0.70 +0.5 743,063 - ABIE53_000688 0.70 -0.1 743,063 - ABIE53_000688 0.70 +1.1 743,063 - ABIE53_000688 0.70 +1.8 743,063 - ABIE53_000688 0.70 +1.0 743,066 + ABIE53_000688 0.70 -0.9 743,066 + ABIE53_000688 0.70 +0.9 743,066 + ABIE53_000688 0.70 -0.7 743,066 + ABIE53_000688 0.70 +1.2 743,066 + ABIE53_000688 0.70 +1.5 743,066 + ABIE53_000688 0.70 +1.2 743,066 + ABIE53_000688 0.70 +1.2 743,067 - ABIE53_000688 0.70 -0.8 743,067 - ABIE53_000688 0.70 +0.3 743,067 - ABIE53_000688 0.70 -2.0 743,067 - ABIE53_000688 0.70 -0.1 743,067 - ABIE53_000688 0.70 -1.1 743,067 - ABIE53_000688 0.70 +1.2 743,067 - ABIE53_000688 0.70 -1.7 743,199 - ABIE53_000688 0.88 -0.0 743,199 - ABIE53_000688 0.88 +0.6 743,199 - ABIE53_000688 0.88 -0.7 743,237 + +1.5 743,237 + +1.5 743,237 + +1.5 743,237 + +2.3 743,237 + +0.5 743,237 + +0.9 743,237 + +1.4 743,237 + +3.6 743,237 + +2.3 743,237 + +1.6 743,237 + +0.5 743,238 - -0.7 743,238 - +1.0 743,238 - -0.4 743,238 - -0.7 743,238 - -0.1 743,238 - -2.0 743,238 - -0.3 743,238 - +0.4 743,238 - +0.9 743,238 - -1.5 743,238 - +1.9 743,238 - -0.4 743,252 + +1.7 743,253 - -1.1 743,253 - +0.0 743,253 - +1.0 743,253 - -0.1 743,255 + +1.4 743,282 + +2.0 743,282 + +0.3 743,282 + +0.9 743,283 - -0.5 743,283 - -0.6 743,317 + +1.1 743,318 - +0.2 743,357 + -0.1 743,357 + +3.5 743,357 + -0.3 743,357 + -1.3 743,357 + -0.1 743,357 + +1.5 743,357 + -1.0 743,357 + +0.5 743,357 + -2.0 743,357 + -0.0 743,357 + -1.8 743,357 + +0.9 743,358 - -1.0 743,358 - -1.3 743,358 - -3.4 743,358 - -0.2 743,358 - -0.3 743,358 - +0.1 743,358 - +1.7 743,358 - +0.3 743,358 - +0.6 743,358 - +0.5 743,461 + ABIE53_000689 0.11 +1.6 743,461 + ABIE53_000689 0.11 +0.4 743,461 + ABIE53_000689 0.11 -0.3 743,461 + ABIE53_000689 0.11 -0.4 743,462 - ABIE53_000689 0.11 +0.9 743,462 - ABIE53_000689 0.11 +0.0 743,462 - ABIE53_000689 0.11 -1.5 743,462 - ABIE53_000689 0.11 -1.2 743,462 - ABIE53_000689 0.11 +1.0 743,462 - ABIE53_000689 0.11 -2.3 743,462 - ABIE53_000689 0.11 +0.4 743,462 - ABIE53_000689 0.11 +0.0 743,462 - ABIE53_000689 0.11 -0.9 743,706 + ABIE53_000689 0.33 +2.0 743,707 + ABIE53_000689 0.33 +0.7 743,707 + ABIE53_000689 0.33 -0.9 743,707 + ABIE53_000689 0.33 -2.2 743,707 + ABIE53_000689 0.33 +0.1 743,707 + ABIE53_000689 0.33 +0.1 743,707 + ABIE53_000689 0.33 +0.7 743,708 - ABIE53_000689 0.33 +0.3 743,708 - ABIE53_000689 0.33 +0.1 743,708 - ABIE53_000689 0.33 -0.3 743,708 - ABIE53_000689 0.33 +0.9 743,708 - ABIE53_000689 0.33 -0.5 743,708 - ABIE53_000689 0.33 -1.3 743,708 - ABIE53_000689 0.33 +1.2 743,779 + ABIE53_000689 0.40 -0.4 743,779 + ABIE53_000689 0.40 +1.1 743,779 + ABIE53_000689 0.40 +0.6 743,779 + ABIE53_000689 0.40 +0.2 743,779 + ABIE53_000689 0.40 -0.3 743,780 - ABIE53_000689 0.40 -0.0 743,780 - ABIE53_000689 0.40 -0.6 743,780 - ABIE53_000689 0.40 +1.0 743,902 + ABIE53_000689 0.51 +2.0 743,902 + ABIE53_000689 0.51 -3.0 743,902 + ABIE53_000689 0.51 -0.2 743,902 + ABIE53_000689 0.51 -0.9 743,902 + ABIE53_000689 0.51 -0.7 743,902 + ABIE53_000689 0.51 -0.6 743,902 + ABIE53_000689 0.51 +0.5 743,903 - ABIE53_000689 0.51 +0.5 743,903 - ABIE53_000689 0.51 +0.3 743,903 - ABIE53_000689 0.51 -0.1 743,903 - ABIE53_000689 0.51 +0.5 743,903 - ABIE53_000689 0.51 +0.5 744,103 + ABIE53_000689 0.69 +1.6 744,103 + ABIE53_000689 0.69 -0.4 744,104 - ABIE53_000689 0.69 +0.3 744,210 + ABIE53_000689 0.79 +0.2 744,211 - ABIE53_000689 0.79 +1.2 744,211 - ABIE53_000689 0.79 +0.4
Or see this region's nucleotide sequence