Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3376

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
4,351,704	+		BT3375	0.17	-1.5
4,351,715	-		BT3375	0.17	-1.3
4,351,715	-		BT3375	0.17	+0.4
4,351,809	-		BT3375	0.26	-0.0
4,351,845	+		BT3375	0.29	-0.3
4,351,846	-		BT3375	0.29	-1.1
4,351,848	-		BT3375	0.29	-2.9
4,351,935	+		BT3375	0.36	-0.4
4,351,936	-		BT3375	0.37	-1.9
4,351,936	-		BT3375	0.37	-1.2
4,351,936	-		BT3375	0.37	-1.7
4,351,938	-		BT3375	0.37	+1.3
4,351,983	-		BT3375	0.41	-0.6
4,352,021	+		BT3375	0.44	-1.9
4,352,051	-		BT3375	0.46	-0.3
4,352,067	+		BT3375	0.48	-0.6
4,352,083	-		BT3375	0.49	-1.0
4,352,086	-		BT3375	0.49	-1.9
4,352,103	-		BT3375	0.51	+0.1
4,352,106	+		BT3375	0.51	-2.3
4,352,106	+		BT3375	0.51	-0.0
4,352,214	-		BT3375	0.60	-2.2
4,352,283	-		BT3375	0.66	-1.0
4,352,283	-		BT3375	0.66	-1.8
4,352,283	-		BT3375	0.66	-1.0
4,352,287	-		BT3375	0.67	+0.6
4,352,287	-		BT3375	0.67	-4.5
4,352,296	-		BT3375	0.68	-3.2
4,352,299	+		BT3375	0.68	-2.3
4,352,300	-		BT3375	0.68	-1.5
4,352,323	-		BT3375	0.70	-1.8
4,352,324	+		BT3375	0.70	-1.9
4,352,369	-		BT3375	0.74	-0.7
4,352,369	-		BT3375	0.74	-1.9
4,352,399	+		BT3375	0.76	-0.3
4,352,420	-		BT3375	0.78	-2.8
4,352,430	-		BT3375	0.79	-1.5
4,352,502	-		BT3375	0.85	-0.9
4,352,523	-		BT3375	0.87	-2.1
4,352,538	+		BT3375	0.88	-0.0
4,352,557	-				-2.1
4,352,642	+				-1.2
4,352,643	-				-1.5
4,352,667	+				-1.3
4,352,699	+				-1.2
4,352,699	+				-1.5
4,352,719	+				-1.7
4,352,843	+		BT3376	0.15	-1.7
4,352,858	-		BT3376	0.17	-0.7
4,352,862	+		BT3376	0.17	-0.3
4,352,862	+		BT3376	0.17	-1.4
4,352,862	+		BT3376	0.17	-2.0
4,352,943	-		BT3376	0.24	-1.5
4,352,964	+		BT3376	0.26	-1.9
4,353,061	-		BT3376	0.35	-2.3
4,353,088	+		BT3376	0.37	-3.0
4,353,158	-		BT3376	0.44	+0.2
4,353,158	-		BT3376	0.44	-1.2
4,353,177	+		BT3376	0.45	-1.0
4,353,219	+		BT3376	0.49	-2.0
4,353,253	-		BT3376	0.52	-0.5
4,353,320	+		BT3376	0.58	-1.7
4,353,320	+		BT3376	0.58	-0.3
4,353,320	+		BT3376	0.58	-2.0
4,353,320	+		BT3376	0.58	-0.3
4,353,321	-		BT3376	0.58	-2.0
4,353,343	-		BT3376	0.60	-1.6
4,353,406	-		BT3376	0.66	-1.8
4,353,444	+		BT3376	0.69	-3.0
4,353,445	-		BT3376	0.69	-1.6
4,353,525	+		BT3376	0.77	-1.0
4,353,544	-		BT3376	0.78	+0.3
4,353,562	-		BT3376	0.80	-0.8
4,353,623	+		BT3376	0.85	-3.3
4,353,639	-		BT3376	0.87	-3.2
4,353,639	-		BT3376	0.87	-0.3
4,353,642	+		BT3376	0.87	-2.6
4,353,769	-				+0.7
4,353,775	-				-0.9
4,353,787	-				-1.0
4,353,812	-				-0.6
4,353,888	-				+0.2
4,353,895	-				-3.3
4,353,910	-				+0.1
4,353,958	+				-0.9
4,353,959	-				+1.0
4,353,966	+				-0.2
4,354,009	-				-3.0
4,354,027	-				+1.6
4,354,084	-		BT3377	0.15	-0.1
4,354,090	+		BT3377	0.16	-0.9
4,354,114	+		BT3377	0.18	-1.1
4,354,115	-		BT3377	0.18	-3.0
4,354,115	-		BT3377	0.18	-0.8
4,354,115	-		BT3377	0.18	-1.1
4,354,117	-		BT3377	0.18	-1.4
4,354,117	-		BT3377	0.18	-2.3
4,354,118	+		BT3377	0.19	-3.0
4,354,119	-		BT3377	0.19	-0.3
4,354,133	-		BT3377	0.20	-0.6
4,354,155	+		BT3377	0.22	+1.3
4,354,232	-		BT3377	0.30	+0.3
4,354,234	+		BT3377	0.31	-2.3
4,354,234	+		BT3377	0.31	+0.9
4,354,235	-		BT3377	0.31	-0.3
4,354,235	-		BT3377	0.31	-2.2
4,354,289	+		BT3377	0.36	+0.5
4,354,290	-		BT3377	0.36	-1.0
4,354,290	-		BT3377	0.36	-1.7
4,354,299	-				-0.7
4,354,344	-		BT3377	0.42	-1.0
4,354,376	+		BT3377	0.45	-0.6
4,354,377	-		BT3377	0.45	-2.0
4,354,391	+		BT3377	0.47	-0.9
4,354,392	-		BT3377	0.47	+0.9
4,354,392	-		BT3377	0.47	-0.9
4,354,413	+		BT3377	0.49	-0.9
4,354,439	-		BT3377	0.52	-1.2
4,354,481	-		BT3377	0.56	-0.1
4,354,556	-		BT3377	0.64	-1.6
4,354,592	-		BT3377	0.67	-1.1
4,354,594	+		BT3377	0.68	-1.1
4,354,594	+		BT3377	0.68	-0.8
4,354,594	+		BT3377	0.68	-1.6
4,354,597	+		BT3377	0.68	-0.2
4,354,621	-		BT3377	0.70	-0.4
4,354,624	-		BT3377	0.71	-2.5
4,354,681	-		BT3377	0.77	-1.3
4,354,723	+		BT3377	0.81	-0.5
4,354,728	-		BT3377	0.82	-1.3
4,354,728	-		BT3377	0.82	-0.1
4,354,736	-		BT3377	0.82	-0.2