Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3253

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
4,152,170	-				-1.0
4,152,705	-		BT3253	0.42	-4.2
4,152,907	-		BT3253	0.58	-2.1
4,152,907	-		BT3253	0.58	-3.3
4,153,238	-		BT3253	0.84	-6.1
4,153,238	-		BT3253	0.84	-4.1
4,153,508	-				+1.6
4,153,508	-				-0.4
4,153,510	-				-0.8
4,153,560	-				+0.9
4,153,578	-				-0.8
4,153,604	-				-1.1
4,153,632	-				-1.4
4,153,632	-				-0.4
4,153,857	-		BT3254	0.16	+0.0
4,153,938	-		BT3254	0.19	-0.1
4,153,942	-		BT3254	0.19	+1.2
4,154,075	-		BT3254	0.26	-0.0
4,154,075	-		BT3254	0.26	+0.3
4,154,095	-		BT3254	0.26	+0.3
4,154,095	-		BT3254	0.26	-0.4
4,154,095	-		BT3254	0.26	-1.1
4,154,095	-		BT3254	0.26	+0.2
4,154,099	-		BT3254	0.27	-0.2
4,154,099	-		BT3254	0.27	+0.7
4,154,224	-		BT3254	0.32	-0.2
4,154,229	-		BT3254	0.33	-0.4
4,154,258	-		BT3254	0.34	-0.7
4,154,296	-		BT3254	0.36	-0.5