Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2002

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2001 and BT2002 are separated by 124 nucleotidesBT2002 and BT2003 are separated by 63 nucleotidesBT2003 and BT2004 are separated by 12 nucleotides BT2001: BT2001 - membrane-associated zinc metalloprotease (NCBI ptt file), at 2,517,142 to 2,518,497 BT2001 BT2002: BT2002 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file), at 2,518,622 to 2,519,794 BT2002 BT2003: BT2003 - putative membrane peptidase (NCBI ptt file), at 2,519,858 to 2,520,715 BT2003 BT2004: BT2004 - RimM protein, required for 16S rRNA processing (NCBI ptt file), at 2,520,728 to 2,521,267 BT2004 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -3 -2 -1 0 1at 2518.505 kb on - strandat 2518.581 kb on - strandat 2520.085 kb on - strand, within BT2003at 2520.149 kb on - strand, within BT2003at 2520.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
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2,518,505 - +0.1
2,518,581 - -2.6
2,520,085 - BT2003 0.26 -3.6
2,520,149 - BT2003 0.34 -3.4
2,520,641 - -3.2

Or see this region's nucleotide sequence