Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1858

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
2,330,100	-		BT1857	0.16	-4.0
2,330,100	-		BT1857	0.16	-2.2
2,330,104	-		BT1857	0.16	-4.5
2,330,181	+		BT1857	0.24	-2.3
2,330,189	+		BT1857	0.24	-6.0
2,330,201	+		BT1857	0.26	-4.1
2,330,273	+		BT1857	0.32	-3.6
2,330,345	+		BT1857	0.39	-2.0
2,330,346	-		BT1857	0.39	-3.5
2,330,348	-		BT1857	0.39	-2.9
2,330,471	-		BT1857	0.51	-0.4
2,330,519	-		BT1857	0.56	-6.2
2,330,531	-		BT1857	0.57	-6.5
2,330,538	-		BT1857	0.57	-6.1
2,330,544	-				-0.8
2,330,640	-		BT1857	0.67	+1.2
2,330,640	-		BT1857	0.67	-2.7
2,330,769	+		BT1857	0.79	-2.8
2,330,812	+		BT1857	0.83	-0.8
2,330,813	-		BT1857	0.83	-1.7
2,330,920	-				-4.2
2,330,920	-				-3.2
2,330,926	-				-5.5
2,330,982	-				-3.2
2,331,031	+				-3.4
2,331,032	-				+0.1
2,331,044	-				-1.1
2,331,067	-				-1.7
2,331,179	-				-3.5
2,331,192	+				-3.9
2,331,193	-				-7.0
2,331,193	-				-2.2
2,331,193	-				-2.6
2,331,193	-				-0.8
2,331,215	+				-3.7
2,331,234	-		BT1858	0.10	-3.5
2,331,267	-		BT1858	0.12	-2.4
2,331,274	-		BT1858	0.13	-2.4
2,331,319	+		BT1858	0.16	-2.3
2,331,319	+		BT1858	0.16	-2.3
2,331,319	+		BT1858	0.16	-1.8
2,331,364	-		BT1858	0.19	-3.9
2,331,463	-		BT1858	0.25	-4.6
2,331,476	+		BT1858	0.26	-1.8
2,331,476	+		BT1858	0.26	-6.3
2,331,477	-		BT1858	0.26	-3.8
2,331,593	+		BT1858	0.34	-6.1
2,331,599	+		BT1858	0.35	-2.6
2,331,599	+		BT1858	0.35	-4.7
2,331,631	+		BT1858	0.37	-1.8
2,331,825	-		BT1858	0.50	-1.4
2,332,039	+		BT1858	0.64	-2.4
2,332,040	-		BT1858	0.64	-3.1
2,332,044	+		BT1858	0.64	-0.4
2,332,088	+		BT1858	0.67	-3.1
2,332,088	+		BT1858	0.67	-2.3
2,332,089	-		BT1858	0.67	-2.0
2,332,089	-		BT1858	0.67	-2.5
2,332,089	-		BT1858	0.67	-1.8
2,332,091	-		BT1858	0.67	-2.0
2,332,091	-		BT1858	0.67	-3.1
2,332,138	+		BT1858	0.70	-4.3
2,332,138	+		BT1858	0.70	-5.6
2,332,181	-		BT1858	0.73	-2.7
2,332,182	+		BT1858	0.73	-5.2
2,332,182	+		BT1858	0.73	-4.4
2,332,182	+		BT1858	0.73	-1.4
2,332,222	-		BT1858	0.76	-3.9
2,332,229	+		BT1858	0.77	-2.8
2,332,229	+		BT1858	0.77	-2.6
2,332,232	+		BT1858	0.77	-2.9
2,332,296	-		BT1858	0.81	-3.7
2,332,332	+		BT1858	0.83	-5.4
2,332,350	-		BT1858	0.85	-2.5
2,332,588	-				-6.4
2,332,588	-				-4.3
2,332,646	+				-4.3
2,332,724	-		BT1859	0.23	-2.5
2,332,833	+		BT1859	0.41	-5.2
2,332,884	-		BT1859	0.49	-4.2
2,332,884	-		BT1859	0.49	-1.7
2,332,983	+		BT1859	0.66	-5.4
2,332,984	-		BT1859	0.66	-1.7
2,333,032	+		BT1859	0.74	-2.2
2,333,056	+		BT1859	0.78	-3.0
2,333,056	+		BT1859	0.78	-2.8
2,333,110	+		BT1859	0.87	-5.6
2,333,122	+		BT1859	0.89	-0.8
2,333,126	+		BT1859	0.90	-2.9
2,333,127	-		BT1859	0.90	-2.0
2,333,156	-				-1.8
2,333,163	-				-6.2
2,333,206	-				-1.2
2,333,214	-				-1.0
2,333,308	+				-1.2
2,333,309	-				-6.8