Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1240

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
1,543,208	-				-0.5
1,543,259	+		BT1239	0.14	-0.7
1,543,559	+		BT1239	0.47	-0.7
1,543,927	-		BT1239	0.89	+1.3
1,544,034	-				-1.2
1,544,067	-				-1.1
1,544,067	-				+3.6
1,544,104	+				-0.4
1,544,149	+				-2.5
1,544,150	-				-1.9
1,544,211	+				-0.4
1,544,211	+				-0.7
1,544,211	+				-3.1
1,544,214	+				-0.5
1,544,215	-				+0.5
1,544,215	-				-1.0
1,544,403	+		BT1240	0.26	-2.4
1,544,404	-		BT1240	0.26	-1.4
1,544,427	+		BT1240	0.28	-0.6
1,544,527	+		BT1240	0.38	-1.0
1,544,603	+		BT1240	0.45	-2.7
1,544,604	-		BT1240	0.45	+0.6
1,544,710	+		BT1240	0.55	-1.6
1,544,710	+		BT1240	0.55	-1.2
1,544,835	-		BT1240	0.67	-2.1
1,544,851	+		BT1240	0.68	-2.1
1,544,894	+		BT1240	0.72	-2.7
1,544,970	-		BT1240	0.80	-1.6
1,545,093	+				-1.1
1,545,094	-				-0.8
1,545,119	+				+0.1
1,545,191	+				-0.8
1,545,218	+				+1.1
1,545,219	-				+0.3
1,545,222	+				-1.1
1,545,285	+				-2.6
1,545,286	-				-1.3
1,545,306	+				-0.1
1,545,329	-				-1.1
1,545,422	-				+1.1
1,545,527	+				-1.1
1,545,559	+				-1.6
1,545,560	-				-0.5
1,545,568	-				-2.1
1,545,601	+				-0.4
1,545,617	+				-0.5
1,545,627	+				+0.3
1,545,628	-				-0.7
1,545,656	+				+1.1
1,545,673	+				-0.8
1,545,775	+				-1.5
1,545,776	-				-0.7
1,545,808	+				+0.1
1,545,809	-				-1.3
1,546,035	+				-1.3
1,546,064	-				-2.1