Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0645 and BT0646 are separated by 189 nucleotides BT0646 and BT0647 are separated by 92 nucleotides BT0647 and BT0648 are separated by 61 nucleotides BT0648 and BT0649 are separated by 4 nucleotides
BT0645: BT0645 - conserved hypothetical protein (NCBI ptt file), at 796,288 to 796,803
BT0645
BT0646: BT0646 - hypothetical protein (NCBI ptt file), at 796,993 to 797,565
BT0646
BT0647: BT0647 - thiamine phosphate pyrophosphorylase (NCBI ptt file), at 797,658 to 798,266
BT0647
BT0648: BT0648 - molybdopterin biosynthesis protein (NCBI ptt file), at 798,328 to 799,020
BT0648
BT0649: BT0649 - thiamine biosynthesis protein ThiH (NCBI ptt file), at 799,025 to 800,149
BT0649
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 796.699 kb on + strand, within BT0645 at 796.917 kb on - strand at 796.920 kb on + strand at 797.010 kb on - strand at 797.095 kb on + strand, within BT0646 at 797.096 kb on - strand, within BT0646 at 797.169 kb on + strand, within BT0646 at 797.169 kb on + strand, within BT0646 at 797.180 kb on + strand, within BT0646 at 797.301 kb on + strand, within BT0646 at 797.301 kb on + strand, within BT0646 at 797.302 kb on - strand, within BT0646 at 797.323 kb on + strand, within BT0646 at 797.373 kb on + strand, within BT0646 at 797.383 kb on - strand, within BT0646 at 797.390 kb on + strand, within BT0646 at 797.412 kb on - strand, within BT0646 at 797.444 kb on + strand, within BT0646 at 797.456 kb on + strand, within BT0646 at 797.504 kb on + strand, within BT0646 at 797.517 kb on + strand at 797.529 kb on + strand at 797.550 kb on - strand at 797.603 kb on + strand at 797.608 kb on - strand at 797.625 kb on + strand at 797.637 kb on + strand at 797.638 kb on - strand at 797.807 kb on + strand, within BT0647 at 797.880 kb on - strand, within BT0647 at 797.909 kb on + strand, within BT0647 at 797.909 kb on + strand, within BT0647 at 797.939 kb on - strand, within BT0647 at 798.177 kb on + strand, within BT0647 at 798.178 kb on - strand, within BT0647 at 798.212 kb on + strand at 798.212 kb on + strand at 798.219 kb on - strand at 798.357 kb on + strand at 798.358 kb on - strand at 798.460 kb on - strand, within BT0648 at 798.637 kb on - strand, within BT0648 at 798.670 kb on + strand, within BT0648 at 798.673 kb on + strand, within BT0648 at 798.683 kb on + strand, within BT0648 at 798.784 kb on + strand, within BT0648 at 798.785 kb on - strand, within BT0648 at 798.818 kb on + strand, within BT0648 at 798.846 kb on + strand, within BT0648 at 798.866 kb on - strand, within BT0648 at 798.922 kb on + strand, within BT0648 at 798.937 kb on + strand, within BT0648 at 798.942 kb on + strand, within BT0648 at 798.942 kb on + strand, within BT0648
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml remove 796,699 + BT0645 0.80 +0.4 796,917 - -0.8 796,920 + +1.0 797,010 - -0.3 797,095 + BT0646 0.18 -2.1 797,096 - BT0646 0.18 -0.4 797,169 + BT0646 0.31 +1.0 797,169 + BT0646 0.31 -0.7 797,180 + BT0646 0.33 -1.6 797,301 + BT0646 0.54 -0.4 797,301 + BT0646 0.54 -0.9 797,302 - BT0646 0.54 +0.5 797,323 + BT0646 0.58 -0.7 797,373 + BT0646 0.66 -1.0 797,383 - BT0646 0.68 -0.7 797,390 + BT0646 0.69 -0.7 797,412 - BT0646 0.73 +1.1 797,444 + BT0646 0.79 -0.9 797,456 + BT0646 0.81 -1.4 797,504 + BT0646 0.89 +1.5 797,517 + -0.4 797,529 + +1.7 797,550 - -1.2 797,603 + +0.1 797,608 - +0.2 797,625 + -0.0 797,637 + -2.0 797,638 - -0.9 797,807 + BT0647 0.24 -1.9 797,880 - BT0647 0.36 -2.3 797,909 + BT0647 0.41 -0.9 797,909 + BT0647 0.41 -2.2 797,939 - BT0647 0.46 +0.6 798,177 + BT0647 0.85 -2.3 798,178 - BT0647 0.85 -1.3 798,212 + -2.4 798,212 + -1.5 798,219 - -1.7 798,357 + +0.1 798,358 - -0.9 798,460 - BT0648 0.19 -2.2 798,637 - BT0648 0.45 -3.2 798,670 + BT0648 0.49 -2.0 798,673 + BT0648 0.50 +1.5 798,683 + BT0648 0.51 -0.9 798,784 + BT0648 0.66 -1.7 798,785 - BT0648 0.66 -1.2 798,818 + BT0648 0.71 -1.7 798,846 + BT0648 0.75 -2.5 798,866 - BT0648 0.78 -2.0 798,922 + BT0648 0.86 -1.0 798,937 + BT0648 0.88 -2.5 798,942 + BT0648 0.89 -3.4 798,942 + BT0648 0.89 -2.9
Or see this region's nucleotide sequence