Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4803 and Psyr_4804 are separated by 291 nucleotides Psyr_4804 and Psyr_4805 are separated by 112 nucleotides
Psyr_4803: Psyr_4803 - Heavy metal efflux pump CzcA, at 5,693,281 to 5,696,445
_4803
Psyr_4804: Psyr_4804 - conserved hypothetical protein, at 5,696,737 to 5,697,324
_4804
Psyr_4805: Psyr_4805 - YD repeat protein, at 5,697,437 to 5,701,126
_4805
Position (kb) 5696
5697
5698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5695.971 kb on - strand, within Psyr_4803 at 5696.312 kb on + strand at 5696.313 kb on - strand at 5696.392 kb on + strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.444 kb on - strand at 5696.513 kb on - strand at 5696.562 kb on + strand at 5696.562 kb on + strand at 5696.563 kb on - strand at 5696.563 kb on - strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.698 kb on + strand at 5696.698 kb on + strand at 5696.699 kb on - strand at 5696.699 kb on - strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.737 kb on - strand at 5696.737 kb on - strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.756 kb on - strand at 5696.756 kb on - strand at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.012 kb on - strand, within Psyr_4804 at 5697.329 kb on + strand at 5697.329 kb on + strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.410 kb on + strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.533 kb on + strand at 5697.533 kb on + strand at 5697.533 kb on + strand at 5697.533 kb on + strand at 5697.533 kb on + strand at 5697.533 kb on + strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.534 kb on - strand at 5697.893 kb on + strand, within Psyr_4805 at 5697.894 kb on - strand, within Psyr_4805 at 5698.129 kb on + strand, within Psyr_4805 at 5698.130 kb on - strand, within Psyr_4805 at 5698.223 kb on + strand, within Psyr_4805 at 5698.314 kb on - strand, within Psyr_4805 at 5698.314 kb on - strand, within Psyr_4805
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 5,695,971 - Psyr_4803 0.85 +0.4 5,696,312 + -1.1 5,696,313 - -0.5 5,696,392 + -0.5 5,696,393 - -0.3 5,696,393 - -0.2 5,696,393 - +1.0 5,696,444 - +2.2 5,696,513 - -0.8 5,696,562 + -0.2 5,696,562 + -0.4 5,696,563 - +0.3 5,696,563 - -0.5 5,696,633 + -0.0 5,696,633 + +0.4 5,696,633 + +0.1 5,696,633 + +0.2 5,696,634 - +1.0 5,696,634 - -0.3 5,696,634 - -1.4 5,696,635 + +0.6 5,696,635 + -1.1 5,696,635 + +0.5 5,696,635 + +1.6 5,696,635 + -0.8 5,696,635 + -0.3 5,696,635 + -0.8 5,696,635 + -0.5 5,696,635 + +2.2 5,696,635 + -0.5 5,696,635 + +0.5 5,696,635 + -0.3 5,696,635 + +0.0 5,696,635 + -0.5 5,696,635 + +1.6 5,696,635 + +0.6 5,696,635 + -0.9 5,696,636 - +0.3 5,696,636 - -0.7 5,696,636 - +1.1 5,696,636 - -0.9 5,696,636 - -0.5 5,696,636 - -1.7 5,696,636 - +0.4 5,696,636 - -0.4 5,696,698 + -0.4 5,696,698 + -0.1 5,696,699 - +0.2 5,696,699 - -0.2 5,696,708 + +0.6 5,696,708 + -0.7 5,696,708 + +0.7 5,696,708 + +0.6 5,696,708 + +0.5 5,696,708 + +1.6 5,696,708 + -0.4 5,696,708 + -0.9 5,696,708 + -0.6 5,696,708 + -0.6 5,696,709 - -0.7 5,696,709 - +0.5 5,696,709 - +0.5 5,696,709 - -3.4 5,696,709 - -0.6 5,696,709 - -1.2 5,696,709 - -1.2 5,696,709 - -0.1 5,696,709 - +0.6 5,696,709 - -1.4 5,696,709 - -1.1 5,696,709 - +1.2 5,696,709 - +0.2 5,696,709 - -0.0 5,696,709 - -0.1 5,696,709 - +1.6 5,696,709 - +0.5 5,696,709 - +1.3 5,696,709 - -2.4 5,696,737 - -1.0 5,696,737 - +0.4 5,696,751 + -1.3 5,696,751 + +0.1 5,696,751 + +0.5 5,696,752 - -0.4 5,696,752 - -0.8 5,696,752 - +0.0 5,696,752 - -0.2 5,696,752 - +1.9 5,696,752 - +0.8 5,696,755 + +0.7 5,696,755 + +0.1 5,696,755 + -0.2 5,696,756 - +0.5 5,696,756 - +0.3 5,697,011 + Psyr_4804 0.47 -0.7 5,697,011 + Psyr_4804 0.47 +0.1 5,697,011 + Psyr_4804 0.47 -0.9 5,697,012 - Psyr_4804 0.47 -1.9 5,697,329 + -0.1 5,697,329 + +0.3 5,697,330 - +1.9 5,697,330 - -1.3 5,697,330 - -1.5 5,697,330 - -0.8 5,697,410 + +0.4 5,697,411 - -0.4 5,697,411 - +1.2 5,697,411 - +0.1 5,697,411 - +0.3 5,697,411 - +0.4 5,697,533 + +0.6 5,697,533 + -0.1 5,697,533 + +0.0 5,697,533 + +0.2 5,697,533 + -0.4 5,697,533 + -0.3 5,697,534 - +0.4 5,697,534 - +0.4 5,697,534 - -0.6 5,697,534 - +0.3 5,697,534 - +1.1 5,697,534 - -0.2 5,697,534 - +1.2 5,697,893 + Psyr_4805 0.12 +0.1 5,697,894 - Psyr_4805 0.12 -0.7 5,698,129 + Psyr_4805 0.19 +0.5 5,698,130 - Psyr_4805 0.19 +0.1 5,698,223 + Psyr_4805 0.21 +1.1 5,698,314 - Psyr_4805 0.24 -0.2 5,698,314 - Psyr_4805 0.24 +0.4
Or see this region's nucleotide sequence