Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4690 and Psyr_4691 are separated by 268 nucleotides Psyr_4691 and Psyr_4692 are separated by 25 nucleotides
Psyr_4690: Psyr_4690 - Twin-arginine translocation pathway signal, at 5,557,707 to 5,559,626
_4690
Psyr_4691: Psyr_4691 - Metallophosphoesterase, at 5,559,895 to 5,560,728
_4691
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Position (kb) 5559
5560
5561 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.061 kb on - strand, within Psyr_4690 at 5559.061 kb on - strand, within Psyr_4690 at 5559.142 kb on - strand, within Psyr_4690 at 5559.540 kb on - strand at 5559.663 kb on + strand at 5559.663 kb on + strand at 5559.664 kb on - strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.678 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.798 kb on + strand at 5559.799 kb on - strand at 5559.799 kb on - strand at 5559.810 kb on + strand at 5559.811 kb on - strand at 5559.811 kb on - strand at 5559.854 kb on + strand at 5559.855 kb on - strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.941 kb on + strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5560.005 kb on - strand, within Psyr_4691 at 5560.005 kb on - strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.320 kb on - strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.710 kb on + strand at 5560.711 kb on - strand at 5560.731 kb on + strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.769 kb on - strand at 5560.819 kb on - strand at 5560.972 kb on - strand, within Psyr_4692 at 5560.972 kb on - strand, within Psyr_4692 at 5560.986 kb on - strand, within Psyr_4692 at 5561.112 kb on + strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.491 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 5,559,060 + Psyr_4690 0.70 +0.0 5,559,060 + Psyr_4690 0.70 +0.6 5,559,060 + Psyr_4690 0.70 +0.8 5,559,060 + Psyr_4690 0.70 +0.6 5,559,060 + Psyr_4690 0.70 +0.8 5,559,060 + Psyr_4690 0.70 +0.1 5,559,060 + Psyr_4690 0.70 +0.2 5,559,061 - Psyr_4690 0.71 +1.0 5,559,061 - Psyr_4690 0.71 +0.3 5,559,142 - Psyr_4690 0.75 -0.8 5,559,540 - -0.4 5,559,663 + +0.3 5,559,663 + +0.1 5,559,664 - -0.4 5,559,665 + +0.5 5,559,665 + -1.2 5,559,665 + -1.5 5,559,665 + -1.0 5,559,665 + +0.6 5,559,665 + +0.6 5,559,665 + +0.6 5,559,665 + +0.1 5,559,665 + -2.2 5,559,665 + -0.3 5,559,666 - +0.3 5,559,666 - -0.2 5,559,666 - +1.3 5,559,666 - +0.2 5,559,666 - -0.0 5,559,666 - +0.7 5,559,666 - +2.4 5,559,666 - +0.1 5,559,666 - -1.0 5,559,666 - +0.3 5,559,666 - -0.4 5,559,666 - -0.1 5,559,666 - -0.8 5,559,667 + -0.2 5,559,667 + -0.9 5,559,667 + -0.9 5,559,667 + +0.4 5,559,667 + -0.8 5,559,667 + +0.1 5,559,667 + +0.2 5,559,667 + +0.3 5,559,667 + -1.3 5,559,667 + +0.8 5,559,668 - -0.3 5,559,668 - +0.2 5,559,668 - -1.0 5,559,668 - -0.4 5,559,668 - +0.8 5,559,668 - +0.8 5,559,668 - +0.1 5,559,668 - -0.0 5,559,668 - +1.1 5,559,668 - -0.4 5,559,678 + -0.6 5,559,730 + +1.4 5,559,730 + -0.3 5,559,730 + -2.2 5,559,730 + -0.8 5,559,730 + +1.9 5,559,731 - +0.4 5,559,731 - -0.9 5,559,731 - +0.0 5,559,731 - -1.0 5,559,731 - -0.8 5,559,731 - +0.6 5,559,798 + -0.2 5,559,799 - -0.0 5,559,799 - -1.4 5,559,810 + +0.1 5,559,811 - +0.5 5,559,811 - -0.4 5,559,854 + -0.3 5,559,855 - -0.1 5,559,920 + +1.3 5,559,920 + +1.4 5,559,920 + -1.0 5,559,921 - +0.2 5,559,921 - +0.8 5,559,921 - -1.5 5,559,941 + -1.3 5,559,942 - +0.5 5,559,942 - +0.5 5,559,942 - -1.4 5,559,942 - -0.2 5,560,005 - Psyr_4691 0.13 -0.6 5,560,005 - Psyr_4691 0.13 -0.4 5,560,274 + Psyr_4691 0.45 -0.5 5,560,274 + Psyr_4691 0.45 -0.8 5,560,274 + Psyr_4691 0.45 -0.1 5,560,274 + Psyr_4691 0.45 +0.4 5,560,274 + Psyr_4691 0.45 -1.4 5,560,274 + Psyr_4691 0.45 +0.7 5,560,274 + Psyr_4691 0.45 +1.5 5,560,274 + Psyr_4691 0.45 +1.1 5,560,275 - Psyr_4691 0.46 +1.4 5,560,275 - Psyr_4691 0.46 +0.8 5,560,275 - Psyr_4691 0.46 +0.3 5,560,275 - Psyr_4691 0.46 +0.6 5,560,275 - Psyr_4691 0.46 +0.9 5,560,275 - Psyr_4691 0.46 +0.1 5,560,320 - Psyr_4691 0.51 -0.2 5,560,430 + Psyr_4691 0.64 -2.0 5,560,430 + Psyr_4691 0.64 +1.1 5,560,430 + Psyr_4691 0.64 +0.8 5,560,430 + Psyr_4691 0.64 +3.8 5,560,431 - Psyr_4691 0.64 -0.0 5,560,431 - Psyr_4691 0.64 -1.7 5,560,661 + -0.5 5,560,661 + -0.8 5,560,661 + +0.0 5,560,661 + +0.5 5,560,662 - +0.1 5,560,662 - -0.9 5,560,662 - -0.2 5,560,662 - -1.2 5,560,662 - -1.6 5,560,710 + +0.4 5,560,711 - -0.6 5,560,731 + -0.1 5,560,732 - +1.6 5,560,732 - +0.3 5,560,732 - +0.6 5,560,732 - +1.3 5,560,732 - +0.4 5,560,769 - +0.3 5,560,819 - +2.2 5,560,972 - Psyr_4692 0.21 -0.5 5,560,972 - Psyr_4692 0.21 +0.2 5,560,986 - Psyr_4692 0.22 +0.1 5,561,112 + Psyr_4692 0.35 -1.0 5,561,113 - Psyr_4692 0.35 +1.2 5,561,113 - Psyr_4692 0.35 +1.3 5,561,446 + Psyr_4692 0.67 -1.4 5,561,446 + Psyr_4692 0.67 -1.4 5,561,491 + Psyr_4692 0.71 -0.6 5,561,526 + Psyr_4692 0.75 -0.3 5,561,526 + Psyr_4692 0.75 +0.8 5,561,526 + Psyr_4692 0.75 +1.9 5,561,527 - Psyr_4692 0.75 -0.1 5,561,527 - Psyr_4692 0.75 -0.8 5,561,527 - Psyr_4692 0.75 +0.1 5,561,720 + -1.5 5,561,720 + -0.6 5,561,721 - -0.2
Or see this region's nucleotide sequence