Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4263

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4261 and Psyr_4262 are separated by 133 nucleotidesPsyr_4262 and Psyr_4263 are separated by 74 nucleotidesPsyr_4263 and Psyr_4264 are separated by 60 nucleotides Psyr_4261: Psyr_4261 - conserved hypothetical protein, at 5,078,443 to 5,080,296 _4261 Psyr_4262: Psyr_4262 - lipoprotein, putative, at 5,080,430 to 5,080,783 _4262 Psyr_4263: Psyr_4263 - transcription elongation factor GreB, at 5,080,858 to 5,081,355 _4263 Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080 _4264 Position (kb) 5080 5081 5082Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5080.078 kb on - strand, within Psyr_4261at 5080.078 kb on - strand, within Psyr_4261at 5080.138 kb on + strandat 5080.139 kb on - strandat 5080.292 kb on - strandat 5080.363 kb on + strandat 5080.363 kb on + strandat 5080.363 kb on + strandat 5080.363 kb on + strandat 5080.364 kb on - strandat 5080.364 kb on - strandat 5080.364 kb on - strandat 5080.374 kb on + strandat 5080.380 kb on + strandat 5080.392 kb on + strandat 5080.392 kb on + strandat 5080.392 kb on + strandat 5080.392 kb on + strandat 5080.393 kb on - strandat 5080.399 kb on + strandat 5080.399 kb on + strandat 5080.399 kb on + strandat 5080.399 kb on + strandat 5080.399 kb on + strandat 5080.400 kb on - strandat 5080.400 kb on - strandat 5080.400 kb on - strandat 5080.400 kb on - strandat 5080.412 kb on + strandat 5080.413 kb on - strandat 5080.413 kb on - strandat 5080.413 kb on - strandat 5080.413 kb on - strandat 5080.613 kb on + strand, within Psyr_4262at 5080.632 kb on - strand, within Psyr_4262at 5080.840 kb on + strandat 5080.840 kb on + strandat 5080.840 kb on + strandat 5080.841 kb on - strandat 5080.841 kb on - strandat 5080.841 kb on - strandat 5080.841 kb on - strandat 5080.841 kb on - strandat 5080.843 kb on + strandat 5080.844 kb on - strandat 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.942 kb on + strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5080.943 kb on - strand, within Psyr_4263at 5081.007 kb on + strand, within Psyr_4263at 5081.007 kb on + strand, within Psyr_4263at 5081.007 kb on + strand, within Psyr_4263at 5081.007 kb on + strand, within Psyr_4263at 5081.008 kb on - strand, within Psyr_4263at 5081.074 kb on + strand, within Psyr_4263at 5081.074 kb on + strand, within Psyr_4263at 5081.075 kb on - strand, within Psyr_4263at 5081.492 kb on + strandat 5081.493 kb on - strandat 5081.502 kb on - strandat 5081.502 kb on - strandat 5081.502 kb on - strandat 5081.502 kb on - strandat 5081.561 kb on - strandat 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.801 kb on + strand, within Psyr_4264at 5081.802 kb on - strand, within Psyr_4264at 5081.802 kb on - strand, within Psyr_4264at 5081.802 kb on - strand, within Psyr_4264at 5081.805 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.822 kb on + strand, within Psyr_4264at 5081.823 kb on - strand, within Psyr_4264at 5081.823 kb on - strand, within Psyr_4264at 5081.823 kb on - strand, within Psyr_4264at 5081.823 kb on - strand, within Psyr_4264at 5081.826 kb on + strand, within Psyr_4264at 5081.827 kb on - strand, within Psyr_4264at 5081.997 kb on + strand, within Psyr_4264at 5082.083 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.146 kb on + strand, within Psyr_4264at 5082.147 kb on - strand, within Psyr_4264at 5082.147 kb on - strand, within Psyr_4264at 5082.147 kb on - strand, within Psyr_4264at 5082.147 kb on - strand, within Psyr_4264at 5082.147 kb on - strand, within Psyr_4264at 5082.350 kb on + strand, within Psyr_4264at 5082.350 kb on + strand, within Psyr_4264at 5082.350 kb on + strand, within Psyr_4264at 5082.351 kb on - strand, within Psyr_4264at 5082.351 kb on - strand, within Psyr_4264

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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5,080,078 - Psyr_4261 0.88 +0.2
5,080,078 - Psyr_4261 0.88 -0.2
5,080,138 + +0.7
5,080,139 - +0.5
5,080,292 - +0.8
5,080,363 + -0.2
5,080,363 + -0.3
5,080,363 + -1.2
5,080,363 + +0.1
5,080,364 - +0.7
5,080,364 - +0.2
5,080,364 - -0.3
5,080,374 + +0.3
5,080,380 + +1.3
5,080,392 + +0.5
5,080,392 + -1.5
5,080,392 + +0.7
5,080,392 + +0.2
5,080,393 - +0.0
5,080,399 + +0.8
5,080,399 + -2.5
5,080,399 + -1.5
5,080,399 + +1.2
5,080,399 + +0.4
5,080,400 - -0.0
5,080,400 - +0.9
5,080,400 - +0.1
5,080,400 - +0.0
5,080,412 + +0.1
5,080,413 - -0.3
5,080,413 - +1.3
5,080,413 - -0.9
5,080,413 - +1.2
5,080,613 + Psyr_4262 0.52 +2.3
5,080,632 - Psyr_4262 0.57 +0.3
5,080,840 + +1.4
5,080,840 + -0.6
5,080,840 + -0.1
5,080,841 - +0.7
5,080,841 - +0.3
5,080,841 - -0.2
5,080,841 - +0.8
5,080,841 - +1.1
5,080,843 + -0.0
5,080,844 - +0.6
5,080,942 + Psyr_4263 0.17 +0.4
5,080,942 + Psyr_4263 0.17 -2.2
5,080,942 + Psyr_4263 0.17 -0.4
5,080,942 + Psyr_4263 0.17 +0.8
5,080,942 + Psyr_4263 0.17 +1.1
5,080,942 + Psyr_4263 0.17 -1.2
5,080,942 + Psyr_4263 0.17 -0.6
5,080,942 + Psyr_4263 0.17 +0.5
5,080,942 + Psyr_4263 0.17 +1.7
5,080,943 - Psyr_4263 0.17 -0.3
5,080,943 - Psyr_4263 0.17 +0.5
5,080,943 - Psyr_4263 0.17 -1.4
5,080,943 - Psyr_4263 0.17 +0.1
5,080,943 - Psyr_4263 0.17 -0.0
5,080,943 - Psyr_4263 0.17 +0.9
5,080,943 - Psyr_4263 0.17 +2.7
5,080,943 - Psyr_4263 0.17 -0.0
5,080,943 - Psyr_4263 0.17 -0.4
5,081,007 + Psyr_4263 0.30 -0.5
5,081,007 + Psyr_4263 0.30 +0.0
5,081,007 + Psyr_4263 0.30 -1.1
5,081,007 + Psyr_4263 0.30 -0.4
5,081,008 - Psyr_4263 0.30 +0.6
5,081,074 + Psyr_4263 0.43 -1.3
5,081,074 + Psyr_4263 0.43 -1.5
5,081,075 - Psyr_4263 0.44 +0.2
5,081,492 + +3.1
5,081,493 - -0.2
5,081,502 - -1.0
5,081,502 - +0.3
5,081,502 - -0.7
5,081,502 - -0.5
5,081,561 - -2.8
5,081,801 + Psyr_4264 0.23 -1.4
5,081,801 + Psyr_4264 0.23 -1.3
5,081,801 + Psyr_4264 0.23 +0.9
5,081,801 + Psyr_4264 0.23 -1.5
5,081,801 + Psyr_4264 0.23 -0.8
5,081,801 + Psyr_4264 0.23 +0.7
5,081,801 + Psyr_4264 0.23 -0.6
5,081,802 - Psyr_4264 0.23 -0.2
5,081,802 - Psyr_4264 0.23 +0.5
5,081,802 - Psyr_4264 0.23 +0.9
5,081,805 + Psyr_4264 0.23 -0.6
5,081,822 + Psyr_4264 0.24 -1.9
5,081,822 + Psyr_4264 0.24 -1.9
5,081,822 + Psyr_4264 0.24 +0.7
5,081,822 + Psyr_4264 0.24 -0.8
5,081,822 + Psyr_4264 0.24 -2.8
5,081,822 + Psyr_4264 0.24 -1.2
5,081,822 + Psyr_4264 0.24 -1.1
5,081,823 - Psyr_4264 0.24 -2.7
5,081,823 - Psyr_4264 0.24 -0.3
5,081,823 - Psyr_4264 0.24 +0.5
5,081,823 - Psyr_4264 0.24 +0.2
5,081,826 + Psyr_4264 0.25 -1.1
5,081,827 - Psyr_4264 0.25 +0.5
5,081,997 + Psyr_4264 0.35 -1.9
5,082,083 + Psyr_4264 0.40 -0.3
5,082,146 + Psyr_4264 0.44 -2.6
5,082,146 + Psyr_4264 0.44 +1.2
5,082,146 + Psyr_4264 0.44 -1.5
5,082,146 + Psyr_4264 0.44 +0.8
5,082,146 + Psyr_4264 0.44 -0.5
5,082,146 + Psyr_4264 0.44 -0.6
5,082,147 - Psyr_4264 0.44 -0.1
5,082,147 - Psyr_4264 0.44 -0.5
5,082,147 - Psyr_4264 0.44 -0.8
5,082,147 - Psyr_4264 0.44 -0.4
5,082,147 - Psyr_4264 0.44 +1.0
5,082,350 + Psyr_4264 0.56 -0.3
5,082,350 + Psyr_4264 0.56 -1.3
5,082,350 + Psyr_4264 0.56 +0.6
5,082,351 - Psyr_4264 0.56 -3.2
5,082,351 - Psyr_4264 0.56 -0.7

Or see this region's nucleotide sequence