Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3932

Experiment: KB with Naringin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3931 and Psyr_3932 overlap by 4 nucleotidesPsyr_3932 and Psyr_3933 overlap by 4 nucleotidesPsyr_3933 and Psyr_3934 are separated by 22 nucleotides Psyr_3931: Psyr_3931 - conserved hypothetical protein, at 4,676,822 to 4,678,018 _3931 Psyr_3932: Psyr_3932 - Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K, at 4,678,015 to 4,679,022 _3932 Psyr_3933: Psyr_3933 - conserved hypothetical protein, at 4,679,019 to 4,679,318 _3933 Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090 _3934 Position (kb) 4678 4679 4680Strain fitness (log2 ratio) -1 0 1 2 3at 4677.030 kb on + strand, within Psyr_3931at 4677.036 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.090 kb on + strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.091 kb on - strand, within Psyr_3931at 4677.093 kb on + strand, within Psyr_3931at 4677.147 kb on + strand, within Psyr_3931at 4677.153 kb on + strand, within Psyr_3931at 4677.154 kb on - strand, within Psyr_3931at 4677.154 kb on - strand, within Psyr_3931at 4677.534 kb on - strand, within Psyr_3931at 4677.858 kb on + strand, within Psyr_3931at 4677.859 kb on - strand, within Psyr_3931at 4677.867 kb on + strand, within Psyr_3931at 4677.868 kb on - strand, within Psyr_3931at 4678.264 kb on + strand, within Psyr_3932at 4678.265 kb on - strand, within Psyr_3932at 4678.265 kb on - strand, within Psyr_3932at 4678.464 kb on + strand, within Psyr_3932at 4679.158 kb on + strand, within Psyr_3933at 4679.158 kb on + strand, within Psyr_3933at 4679.159 kb on - strand, within Psyr_3933at 4679.226 kb on - strand, within Psyr_3933at 4679.226 kb on - strand, within Psyr_3933at 4679.776 kb on - strand, within Psyr_3934at 4680.015 kb on - strand, within Psyr_3934

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
remove
4,677,030 + Psyr_3931 0.17 +0.7
4,677,036 + Psyr_3931 0.18 +0.1
4,677,090 + Psyr_3931 0.22 -1.0
4,677,090 + Psyr_3931 0.22 +2.3
4,677,090 + Psyr_3931 0.22 +2.0
4,677,090 + Psyr_3931 0.22 -1.1
4,677,090 + Psyr_3931 0.22 +1.1
4,677,090 + Psyr_3931 0.22 +0.3
4,677,090 + Psyr_3931 0.22 +0.9
4,677,091 - Psyr_3931 0.22 +0.8
4,677,091 - Psyr_3931 0.22 -0.4
4,677,091 - Psyr_3931 0.22 -0.4
4,677,091 - Psyr_3931 0.22 -1.3
4,677,091 - Psyr_3931 0.22 +0.5
4,677,091 - Psyr_3931 0.22 +0.6
4,677,091 - Psyr_3931 0.22 +0.6
4,677,091 - Psyr_3931 0.22 +0.0
4,677,091 - Psyr_3931 0.22 -1.4
4,677,093 + Psyr_3931 0.23 +1.2
4,677,147 + Psyr_3931 0.27 -0.2
4,677,153 + Psyr_3931 0.28 -0.5
4,677,154 - Psyr_3931 0.28 +0.9
4,677,154 - Psyr_3931 0.28 +0.0
4,677,534 - Psyr_3931 0.59 +0.3
4,677,858 + Psyr_3931 0.87 -0.0
4,677,859 - Psyr_3931 0.87 +1.6
4,677,867 + Psyr_3931 0.87 +0.5
4,677,868 - Psyr_3931 0.87 +0.9
4,678,264 + Psyr_3932 0.25 -0.3
4,678,265 - Psyr_3932 0.25 +1.3
4,678,265 - Psyr_3932 0.25 +0.0
4,678,464 + Psyr_3932 0.45 +3.3
4,679,158 + Psyr_3933 0.46 -0.3
4,679,158 + Psyr_3933 0.46 -0.0
4,679,159 - Psyr_3933 0.47 -0.0
4,679,226 - Psyr_3933 0.69 -0.3
4,679,226 - Psyr_3933 0.69 +2.5
4,679,776 - Psyr_3934 0.58 +1.8
4,680,015 - Psyr_3934 0.90 -0.4

Or see this region's nucleotide sequence