Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3885

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3883 and Psyr_3884 are separated by 319 nucleotidesPsyr_3884 and Psyr_3885 are separated by 143 nucleotidesPsyr_3885 and Psyr_3886 are separated by 185 nucleotides Psyr_3883: Psyr_3883 - dCTP deaminase, at 4,624,012 to 4,624,578 _3883 Psyr_3884: Psyr_3884 - cold-shock DNA-binding protein family, at 4,624,898 to 4,625,107 _3884 Psyr_3885: Psyr_3885 - ParA family protein, at 4,625,251 to 4,626,345 _3885 Psyr_3886: Psyr_3886 - methionyl-tRNA synthetase, at 4,626,531 to 4,628,579 _3886 Position (kb) 4625 4626 4627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4624.336 kb on + strand, within Psyr_3883at 4624.336 kb on + strand, within Psyr_3883at 4624.336 kb on + strand, within Psyr_3883at 4624.703 kb on + strandat 4624.703 kb on + strandat 4624.703 kb on + strandat 4624.704 kb on - strandat 4624.704 kb on - strandat 4624.894 kb on + strandat 4625.105 kb on + strandat 4625.155 kb on + strandat 4625.155 kb on + strandat 4626.352 kb on - strandat 4626.385 kb on - strandat 4626.389 kb on + strandat 4626.389 kb on + strandat 4626.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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4,624,336 + Psyr_3883 0.57 -2.9
4,624,336 + Psyr_3883 0.57 -1.1
4,624,336 + Psyr_3883 0.57 -0.8
4,624,703 + +0.9
4,624,703 + -0.3
4,624,703 + -0.6
4,624,704 - +2.0
4,624,704 - -1.0
4,624,894 + +0.8
4,625,105 + +0.0
4,625,155 + -0.6
4,625,155 + -1.0
4,626,352 - -1.9
4,626,385 - +0.3
4,626,389 + +0.9
4,626,389 + -1.9
4,626,489 + -1.6

Or see this region's nucleotide sequence