Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3882 and Psyr_3883 are separated by 113 nucleotides Psyr_3883 and Psyr_3884 are separated by 319 nucleotides Psyr_3884 and Psyr_3885 are separated by 143 nucleotides
Psyr_3882: Psyr_3882 - conserved hypothetical protein, at 4,623,677 to 4,623,898
_3882
Psyr_3883: Psyr_3883 - dCTP deaminase, at 4,624,012 to 4,624,578
_3883
Psyr_3884: Psyr_3884 - cold-shock DNA-binding protein family, at 4,624,898 to 4,625,107
_3884
Psyr_3885: Psyr_3885 - ParA family protein, at 4,625,251 to 4,626,345
_3885
Position (kb) 4624
4625
4626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4623.929 kb on + strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.938 kb on - strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.960 kb on - strand at 4623.960 kb on - strand at 4623.960 kb on - strand at 4623.976 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.980 kb on - strand at 4623.980 kb on - strand at 4623.980 kb on - strand at 4624.049 kb on + strand at 4624.050 kb on - strand at 4624.071 kb on - strand, within Psyr_3883 at 4624.133 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.703 kb on + strand at 4624.703 kb on + strand at 4624.703 kb on + strand at 4624.704 kb on - strand at 4624.704 kb on - strand at 4624.894 kb on + strand at 4625.105 kb on + strand at 4625.155 kb on + strand at 4625.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 4,623,929 + +2.0 4,623,930 - -1.1 4,623,930 - +0.4 4,623,930 - +0.9 4,623,938 - -0.2 4,623,959 + +3.0 4,623,959 + +0.1 4,623,959 + +0.7 4,623,959 + -0.6 4,623,959 + +0.4 4,623,960 - +0.4 4,623,960 - +0.4 4,623,960 - +1.0 4,623,976 + -1.1 4,623,979 + +0.0 4,623,979 + +0.7 4,623,979 + -0.9 4,623,979 + -1.3 4,623,980 - -2.0 4,623,980 - +0.9 4,623,980 - +1.4 4,624,049 + -1.6 4,624,050 - -0.9 4,624,071 - Psyr_3883 0.10 -2.1 4,624,133 + Psyr_3883 0.21 -1.9 4,624,336 + Psyr_3883 0.57 -2.9 4,624,336 + Psyr_3883 0.57 -1.1 4,624,336 + Psyr_3883 0.57 -0.8 4,624,703 + +0.9 4,624,703 + -0.3 4,624,703 + -0.6 4,624,704 - +2.0 4,624,704 - -1.0 4,624,894 + +0.8 4,625,105 + +0.0 4,625,155 + -0.6 4,625,155 + -1.0
Or see this region's nucleotide sequence