Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3872

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3871 and Psyr_3872 are separated by 670 nucleotidesPsyr_3872 and Psyr_3873 overlap by 4 nucleotides Psyr_3871: Psyr_3871 - Penicillin amidase, at 4,609,176 to 4,611,650 _3871 Psyr_3872: Psyr_3872 - conserved hypothetical protein, at 4,612,321 to 4,613,367 _3872 Psyr_3873: Psyr_3873 - ATP-dependent DNA ligase:ATP-dependent DNA ligase, at 4,613,364 to 4,615,067 _3873 Position (kb) 4612 4613 4614Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4611.397 kb on + strand, within Psyr_3871at 4611.461 kb on - strandat 4611.461 kb on - strandat 4611.531 kb on + strandat 4611.532 kb on - strandat 4611.600 kb on + strandat 4611.601 kb on - strandat 4611.601 kb on - strandat 4611.648 kb on + strandat 4611.648 kb on + strandat 4611.648 kb on + strandat 4611.649 kb on - strandat 4611.649 kb on - strandat 4611.701 kb on + strandat 4611.701 kb on + strandat 4611.702 kb on - strandat 4611.708 kb on - strandat 4611.708 kb on - strandat 4611.708 kb on - strandat 4611.731 kb on + strandat 4611.830 kb on + strandat 4611.830 kb on + strandat 4611.830 kb on + strandat 4611.830 kb on + strandat 4611.831 kb on - strandat 4611.831 kb on - strandat 4611.831 kb on - strandat 4611.831 kb on - strandat 4611.879 kb on - strandat 4611.879 kb on - strandat 4611.879 kb on - strandat 4612.059 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.290 kb on + strandat 4612.291 kb on - strandat 4612.291 kb on - strandat 4612.291 kb on - strandat 4612.294 kb on + strandat 4612.294 kb on + strandat 4612.294 kb on + strandat 4612.294 kb on + strandat 4612.295 kb on - strandat 4612.295 kb on - strandat 4612.295 kb on - strandat 4612.295 kb on - strandat 4612.354 kb on + strandat 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.376 kb on - strandat 4612.376 kb on - strandat 4612.376 kb on - strandat 4612.456 kb on + strand, within Psyr_3872at 4612.456 kb on + strand, within Psyr_3872at 4612.456 kb on + strand, within Psyr_3872at 4612.482 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.651 kb on + strand, within Psyr_3872at 4612.741 kb on + strand, within Psyr_3872at 4612.742 kb on - strand, within Psyr_3872at 4612.835 kb on - strand, within Psyr_3872at 4612.931 kb on - strand, within Psyr_3872at 4612.931 kb on - strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4613.069 kb on - strand, within Psyr_3872at 4613.385 kb on + strandat 4613.386 kb on - strandat 4613.442 kb on + strandat 4613.442 kb on + strandat 4613.443 kb on - strandat 4613.484 kb on + strandat 4613.484 kb on + strandat 4613.485 kb on - strandat 4613.485 kb on - strandat 4613.485 kb on - strandat 4613.531 kb on - strandat 4613.589 kb on + strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.629 kb on + strand, within Psyr_3873at 4613.651 kb on + strand, within Psyr_3873at 4613.652 kb on - strand, within Psyr_3873at 4613.652 kb on - strand, within Psyr_3873at 4613.905 kb on + strand, within Psyr_3873at 4613.906 kb on - strand, within Psyr_3873at 4613.931 kb on + strand, within Psyr_3873at 4613.932 kb on - strand, within Psyr_3873

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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4,611,397 + Psyr_3871 0.90 +0.4
4,611,461 - -0.8
4,611,461 - +1.4
4,611,531 + -0.1
4,611,532 - +1.1
4,611,600 + +1.6
4,611,601 - +0.6
4,611,601 - -2.9
4,611,648 + +0.6
4,611,648 + -0.3
4,611,648 + -0.1
4,611,649 - +0.4
4,611,649 - -1.0
4,611,701 + -0.5
4,611,701 + -0.1
4,611,702 - +1.0
4,611,708 - -0.3
4,611,708 - +0.9
4,611,708 - -1.0
4,611,731 + -0.3
4,611,830 + -2.6
4,611,830 + -0.4
4,611,830 + +0.1
4,611,830 + -0.3
4,611,831 - -0.0
4,611,831 - +0.6
4,611,831 - -0.6
4,611,831 - -0.6
4,611,879 - +0.7
4,611,879 - -0.6
4,611,879 - +0.9
4,612,059 + +0.4
4,612,290 + +0.3
4,612,290 + -1.4
4,612,290 + -0.4
4,612,290 + -0.4
4,612,290 + -0.6
4,612,290 + -1.3
4,612,290 + -0.2
4,612,291 - +1.5
4,612,291 - +0.4
4,612,291 - +0.4
4,612,294 + +0.2
4,612,294 + +0.7
4,612,294 + +0.7
4,612,294 + +0.9
4,612,295 - +1.2
4,612,295 - +1.1
4,612,295 - -0.0
4,612,295 - -0.6
4,612,354 + -1.0
4,612,375 + +0.7
4,612,375 + -0.6
4,612,375 + +0.6
4,612,375 + +0.4
4,612,376 - +0.4
4,612,376 - +0.4
4,612,376 - +1.1
4,612,456 + Psyr_3872 0.13 +0.0
4,612,456 + Psyr_3872 0.13 +0.0
4,612,456 + Psyr_3872 0.13 +0.4
4,612,482 + Psyr_3872 0.15 +0.8
4,612,589 + Psyr_3872 0.26 -0.0
4,612,589 + Psyr_3872 0.26 +0.7
4,612,589 + Psyr_3872 0.26 -1.4
4,612,589 + Psyr_3872 0.26 -0.7
4,612,589 + Psyr_3872 0.26 -0.6
4,612,589 + Psyr_3872 0.26 -1.7
4,612,589 + Psyr_3872 0.26 -1.0
4,612,590 - Psyr_3872 0.26 +0.4
4,612,590 - Psyr_3872 0.26 +0.9
4,612,590 - Psyr_3872 0.26 +1.6
4,612,590 - Psyr_3872 0.26 +0.4
4,612,590 - Psyr_3872 0.26 +0.7
4,612,590 - Psyr_3872 0.26 +0.8
4,612,590 - Psyr_3872 0.26 +0.8
4,612,651 + Psyr_3872 0.32 -0.2
4,612,741 + Psyr_3872 0.40 +0.3
4,612,742 - Psyr_3872 0.40 -0.3
4,612,835 - Psyr_3872 0.49 -0.7
4,612,931 - Psyr_3872 0.58 +0.9
4,612,931 - Psyr_3872 0.58 +0.2
4,612,948 + Psyr_3872 0.60 -1.0
4,612,948 + Psyr_3872 0.60 -0.2
4,612,948 + Psyr_3872 0.60 +2.4
4,612,948 + Psyr_3872 0.60 +0.4
4,612,948 + Psyr_3872 0.60 +0.9
4,612,948 + Psyr_3872 0.60 +0.7
4,612,948 + Psyr_3872 0.60 -0.8
4,612,948 + Psyr_3872 0.60 -0.4
4,612,948 + Psyr_3872 0.60 +1.1
4,612,948 + Psyr_3872 0.60 +0.1
4,612,949 - Psyr_3872 0.60 +0.4
4,612,949 - Psyr_3872 0.60 -1.1
4,612,949 - Psyr_3872 0.60 +0.4
4,612,949 - Psyr_3872 0.60 +0.6
4,612,949 - Psyr_3872 0.60 +2.4
4,612,949 - Psyr_3872 0.60 +0.8
4,612,949 - Psyr_3872 0.60 +1.2
4,612,949 - Psyr_3872 0.60 -0.2
4,613,069 - Psyr_3872 0.71 +3.3
4,613,385 + -1.0
4,613,386 - -3.0
4,613,442 + -0.2
4,613,442 + +1.6
4,613,443 - +1.3
4,613,484 + -0.4
4,613,484 + -0.2
4,613,485 - +0.7
4,613,485 - +0.2
4,613,485 - -0.5
4,613,531 - -0.4
4,613,589 + Psyr_3873 0.13 +1.1
4,613,590 - Psyr_3873 0.13 +0.8
4,613,590 - Psyr_3873 0.13 -1.0
4,613,590 - Psyr_3873 0.13 +0.3
4,613,629 + Psyr_3873 0.16 -0.8
4,613,651 + Psyr_3873 0.17 +2.6
4,613,652 - Psyr_3873 0.17 +0.6
4,613,652 - Psyr_3873 0.17 -1.0
4,613,905 + Psyr_3873 0.32 -0.5
4,613,906 - Psyr_3873 0.32 -1.1
4,613,931 + Psyr_3873 0.33 -0.7
4,613,932 - Psyr_3873 0.33 +0.4

Or see this region's nucleotide sequence