Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3603 and Psyr_3604 are separated by 32 nucleotides Psyr_3604 and Psyr_3605 are separated by 6 nucleotides
Psyr_3603: Psyr_3603 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,284,869 to 4,285,858
_3603
Psyr_3604: Psyr_3604 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 4,285,891 to 4,287,072
_3604
Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349
_3605
Position (kb) 4285
4286
4287
4288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.142 kb on + strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.143 kb on - strand, within Psyr_3603 at 4285.367 kb on + strand, within Psyr_3603 at 4285.367 kb on + strand, within Psyr_3603 at 4285.367 kb on + strand, within Psyr_3603 at 4285.368 kb on - strand, within Psyr_3603 at 4285.368 kb on - strand, within Psyr_3603 at 4285.368 kb on - strand, within Psyr_3603 at 4285.440 kb on - strand, within Psyr_3603 at 4285.476 kb on + strand, within Psyr_3603 at 4285.622 kb on + strand, within Psyr_3603 at 4285.622 kb on + strand, within Psyr_3603 at 4285.622 kb on + strand, within Psyr_3603 at 4285.623 kb on - strand, within Psyr_3603 at 4285.623 kb on - strand, within Psyr_3603 at 4285.702 kb on + strand, within Psyr_3603 at 4285.702 kb on + strand, within Psyr_3603 at 4285.702 kb on + strand, within Psyr_3603 at 4285.702 kb on + strand, within Psyr_3603 at 4285.703 kb on - strand, within Psyr_3603 at 4285.703 kb on - strand, within Psyr_3603 at 4285.703 kb on - strand, within Psyr_3603 at 4285.754 kb on + strand, within Psyr_3603 at 4285.755 kb on - strand, within Psyr_3603 at 4285.755 kb on - strand, within Psyr_3603 at 4285.999 kb on + strand at 4285.999 kb on + strand at 4286.179 kb on + strand, within Psyr_3604 at 4286.180 kb on - strand, within Psyr_3604 at 4286.180 kb on - strand, within Psyr_3604 at 4286.875 kb on + strand, within Psyr_3604 at 4286.876 kb on - strand, within Psyr_3604 at 4287.071 kb on - strand at 4287.071 kb on - strand at 4287.071 kb on - strand at 4287.452 kb on + strand, within Psyr_3605 at 4287.453 kb on - strand, within Psyr_3605 at 4287.569 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.776 kb on + strand, within Psyr_3605 at 4287.777 kb on - strand, within Psyr_3605 at 4287.777 kb on - strand, within Psyr_3605 at 4287.780 kb on + strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 4,285,142 + Psyr_3603 0.28 +3.4 4,285,142 + Psyr_3603 0.28 +0.2 4,285,142 + Psyr_3603 0.28 -1.6 4,285,142 + Psyr_3603 0.28 -0.9 4,285,142 + Psyr_3603 0.28 +0.4 4,285,142 + Psyr_3603 0.28 -1.3 4,285,142 + Psyr_3603 0.28 -1.1 4,285,143 - Psyr_3603 0.28 -1.2 4,285,143 - Psyr_3603 0.28 +0.4 4,285,143 - Psyr_3603 0.28 -0.7 4,285,143 - Psyr_3603 0.28 -0.6 4,285,143 - Psyr_3603 0.28 +1.1 4,285,143 - Psyr_3603 0.28 -1.8 4,285,367 + Psyr_3603 0.50 +0.1 4,285,367 + Psyr_3603 0.50 +0.7 4,285,367 + Psyr_3603 0.50 +0.6 4,285,368 - Psyr_3603 0.50 +0.9 4,285,368 - Psyr_3603 0.50 +0.1 4,285,368 - Psyr_3603 0.50 +0.3 4,285,440 - Psyr_3603 0.58 -0.3 4,285,476 + Psyr_3603 0.61 +1.6 4,285,622 + Psyr_3603 0.76 -1.3 4,285,622 + Psyr_3603 0.76 -0.6 4,285,622 + Psyr_3603 0.76 -0.4 4,285,623 - Psyr_3603 0.76 -0.2 4,285,623 - Psyr_3603 0.76 +0.5 4,285,702 + Psyr_3603 0.84 -1.6 4,285,702 + Psyr_3603 0.84 -0.9 4,285,702 + Psyr_3603 0.84 +0.3 4,285,702 + Psyr_3603 0.84 +0.2 4,285,703 - Psyr_3603 0.84 +1.0 4,285,703 - Psyr_3603 0.84 -0.5 4,285,703 - Psyr_3603 0.84 -0.1 4,285,754 + Psyr_3603 0.89 -1.4 4,285,755 - Psyr_3603 0.89 -0.6 4,285,755 - Psyr_3603 0.89 +0.6 4,285,999 + +0.8 4,285,999 + +0.8 4,286,179 + Psyr_3604 0.24 -0.2 4,286,180 - Psyr_3604 0.24 +0.5 4,286,180 - Psyr_3604 0.24 -1.6 4,286,875 + Psyr_3604 0.83 +1.0 4,286,876 - Psyr_3604 0.83 +1.1 4,287,071 - +0.8 4,287,071 - +1.2 4,287,071 - -0.6 4,287,452 + Psyr_3605 0.16 +0.8 4,287,453 - Psyr_3605 0.16 -0.7 4,287,569 + Psyr_3605 0.22 +0.7 4,287,691 + Psyr_3605 0.27 -0.7 4,287,691 + Psyr_3605 0.27 -0.1 4,287,691 + Psyr_3605 0.27 +0.2 4,287,692 - Psyr_3605 0.27 -2.6 4,287,692 - Psyr_3605 0.27 +0.7 4,287,692 - Psyr_3605 0.27 -1.3 4,287,776 + Psyr_3605 0.31 -0.6 4,287,777 - Psyr_3605 0.31 +2.0 4,287,777 - Psyr_3605 0.31 -0.6 4,287,780 + Psyr_3605 0.31 -1.2 4,287,781 - Psyr_3605 0.31 -0.9 4,287,781 - Psyr_3605 0.31 +0.2 4,287,781 - Psyr_3605 0.31 +0.4
Or see this region's nucleotide sequence