Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3363

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3362 and Psyr_3363 are separated by 90 nucleotidesPsyr_3363 and Psyr_3364 are separated by 144 nucleotides Psyr_3362: Psyr_3362 - AFG1-like ATPase, at 4,019,832 to 4,020,947 _3362 Psyr_3363: Psyr_3363 - Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter, at 4,021,038 to 4,022,483 _3363 Psyr_3364: Psyr_3364 - Beta-lactamase, at 4,022,628 to 4,023,785 _3364 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4020.427 kb on + strand, within Psyr_3362at 4020.428 kb on - strand, within Psyr_3362at 4020.428 kb on - strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.484 kb on + strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.485 kb on - strand, within Psyr_3362at 4020.486 kb on + strand, within Psyr_3362at 4020.486 kb on + strand, within Psyr_3362at 4020.487 kb on - strand, within Psyr_3362at 4020.487 kb on - strand, within Psyr_3362at 4020.665 kb on + strand, within Psyr_3362at 4020.665 kb on + strand, within Psyr_3362at 4020.665 kb on + strand, within Psyr_3362at 4020.666 kb on - strand, within Psyr_3362at 4020.802 kb on + strand, within Psyr_3362at 4020.989 kb on + strandat 4020.989 kb on + strandat 4020.989 kb on + strandat 4020.989 kb on + strandat 4020.989 kb on + strandat 4020.992 kb on - strandat 4020.992 kb on - strandat 4020.992 kb on - strandat 4020.992 kb on - strandat 4021.283 kb on - strand, within Psyr_3363at 4021.283 kb on - strand, within Psyr_3363at 4021.367 kb on + strand, within Psyr_3363at 4021.368 kb on - strand, within Psyr_3363at 4021.437 kb on + strand, within Psyr_3363at 4021.437 kb on + strand, within Psyr_3363at 4021.437 kb on + strand, within Psyr_3363at 4021.437 kb on + strand, within Psyr_3363at 4021.437 kb on + strand, within Psyr_3363at 4021.438 kb on - strand, within Psyr_3363at 4021.438 kb on - strand, within Psyr_3363at 4021.714 kb on - strand, within Psyr_3363at 4021.936 kb on + strand, within Psyr_3363at 4021.936 kb on + strand, within Psyr_3363at 4021.937 kb on - strand, within Psyr_3363at 4021.937 kb on - strand, within Psyr_3363at 4022.226 kb on + strand, within Psyr_3363at 4022.226 kb on + strand, within Psyr_3363at 4022.242 kb on + strand, within Psyr_3363at 4022.243 kb on - strand, within Psyr_3363at 4022.366 kb on - strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.489 kb on - strandat 4022.531 kb on + strandat 4022.531 kb on + strandat 4022.531 kb on + strandat 4022.532 kb on - strandat 4022.532 kb on - strandat 4022.621 kb on + strandat 4022.621 kb on + strandat 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.815 kb on - strand, within Psyr_3364at 4022.815 kb on - strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.963 kb on + strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4023.087 kb on + strand, within Psyr_3364at 4023.111 kb on + strand, within Psyr_3364at 4023.111 kb on + strand, within Psyr_3364at 4023.112 kb on - strand, within Psyr_3364at 4023.135 kb on + strand, within Psyr_3364at 4023.135 kb on + strand, within Psyr_3364at 4023.136 kb on - strand, within Psyr_3364at 4023.242 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.252 kb on - strand, within Psyr_3364at 4023.252 kb on - strand, within Psyr_3364at 4023.259 kb on + strand, within Psyr_3364at 4023.260 kb on - strand, within Psyr_3364at 4023.283 kb on - strand, within Psyr_3364at 4023.383 kb on - strand, within Psyr_3364at 4023.462 kb on + strand, within Psyr_3364

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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4,020,427 + Psyr_3362 0.53 +0.0
4,020,428 - Psyr_3362 0.53 +1.4
4,020,428 - Psyr_3362 0.53 -0.2
4,020,484 + Psyr_3362 0.58 +1.4
4,020,484 + Psyr_3362 0.58 -0.1
4,020,484 + Psyr_3362 0.58 -0.2
4,020,484 + Psyr_3362 0.58 +0.6
4,020,484 + Psyr_3362 0.58 -1.2
4,020,484 + Psyr_3362 0.58 +2.5
4,020,484 + Psyr_3362 0.58 -0.8
4,020,485 - Psyr_3362 0.59 +0.7
4,020,485 - Psyr_3362 0.59 -0.3
4,020,485 - Psyr_3362 0.59 -0.4
4,020,485 - Psyr_3362 0.59 +2.1
4,020,485 - Psyr_3362 0.59 +0.9
4,020,485 - Psyr_3362 0.59 +0.5
4,020,485 - Psyr_3362 0.59 -0.5
4,020,485 - Psyr_3362 0.59 +1.0
4,020,485 - Psyr_3362 0.59 +0.9
4,020,485 - Psyr_3362 0.59 -2.6
4,020,486 + Psyr_3362 0.59 -2.4
4,020,486 + Psyr_3362 0.59 +0.8
4,020,487 - Psyr_3362 0.59 -0.2
4,020,487 - Psyr_3362 0.59 +1.3
4,020,665 + Psyr_3362 0.75 +0.1
4,020,665 + Psyr_3362 0.75 +0.9
4,020,665 + Psyr_3362 0.75 -1.5
4,020,666 - Psyr_3362 0.75 +0.1
4,020,802 + Psyr_3362 0.87 -0.3
4,020,989 + +0.4
4,020,989 + +1.0
4,020,989 + +0.4
4,020,989 + +0.7
4,020,989 + +0.8
4,020,992 - +0.5
4,020,992 - +0.3
4,020,992 - -1.4
4,020,992 - +1.1
4,021,283 - Psyr_3363 0.17 -0.1
4,021,283 - Psyr_3363 0.17 -0.3
4,021,367 + Psyr_3363 0.23 +0.7
4,021,368 - Psyr_3363 0.23 -0.9
4,021,437 + Psyr_3363 0.28 -0.8
4,021,437 + Psyr_3363 0.28 -1.0
4,021,437 + Psyr_3363 0.28 -0.8
4,021,437 + Psyr_3363 0.28 +0.4
4,021,437 + Psyr_3363 0.28 +0.2
4,021,438 - Psyr_3363 0.28 -2.1
4,021,438 - Psyr_3363 0.28 +0.1
4,021,714 - Psyr_3363 0.47 +0.4
4,021,936 + Psyr_3363 0.62 -1.3
4,021,936 + Psyr_3363 0.62 -1.0
4,021,937 - Psyr_3363 0.62 +0.5
4,021,937 - Psyr_3363 0.62 -0.3
4,022,226 + Psyr_3363 0.82 -2.3
4,022,226 + Psyr_3363 0.82 +0.7
4,022,242 + Psyr_3363 0.83 +0.3
4,022,243 - Psyr_3363 0.83 -0.2
4,022,366 - +1.0
4,022,466 + -1.5
4,022,466 + -0.7
4,022,466 + +1.4
4,022,466 + +0.4
4,022,466 + -0.8
4,022,466 + +0.4
4,022,466 + +0.6
4,022,467 - -0.3
4,022,467 - -0.4
4,022,467 - -0.5
4,022,467 - -1.4
4,022,467 - -1.0
4,022,467 - -0.4
4,022,489 - +0.6
4,022,531 + +1.4
4,022,531 + -0.9
4,022,531 + +0.4
4,022,532 - -0.5
4,022,532 - +0.4
4,022,621 + -0.3
4,022,621 + +0.4
4,022,808 + Psyr_3364 0.16 +0.2
4,022,808 + Psyr_3364 0.16 +0.7
4,022,808 + Psyr_3364 0.16 -0.0
4,022,809 - Psyr_3364 0.16 -0.2
4,022,809 - Psyr_3364 0.16 -1.2
4,022,809 - Psyr_3364 0.16 +1.4
4,022,815 - Psyr_3364 0.16 -1.5
4,022,815 - Psyr_3364 0.16 +3.2
4,022,961 + Psyr_3364 0.29 +0.2
4,022,961 + Psyr_3364 0.29 -0.5
4,022,961 + Psyr_3364 0.29 -1.8
4,022,961 + Psyr_3364 0.29 -0.3
4,022,961 + Psyr_3364 0.29 +0.9
4,022,961 + Psyr_3364 0.29 +2.3
4,022,961 + Psyr_3364 0.29 -0.4
4,022,961 + Psyr_3364 0.29 +0.2
4,022,961 + Psyr_3364 0.29 +1.8
4,022,961 + Psyr_3364 0.29 +0.9
4,022,961 + Psyr_3364 0.29 -0.5
4,022,961 + Psyr_3364 0.29 +0.4
4,022,961 + Psyr_3364 0.29 +0.7
4,022,961 + Psyr_3364 0.29 +0.9
4,022,961 + Psyr_3364 0.29 -0.2
4,022,962 - Psyr_3364 0.29 +0.2
4,022,962 - Psyr_3364 0.29 +0.2
4,022,962 - Psyr_3364 0.29 +0.0
4,022,962 - Psyr_3364 0.29 +1.6
4,022,962 - Psyr_3364 0.29 +0.8
4,022,962 - Psyr_3364 0.29 -1.2
4,022,962 - Psyr_3364 0.29 -0.3
4,022,962 - Psyr_3364 0.29 +0.1
4,022,962 - Psyr_3364 0.29 -0.2
4,022,962 - Psyr_3364 0.29 +0.5
4,022,962 - Psyr_3364 0.29 +1.6
4,022,962 - Psyr_3364 0.29 +0.3
4,022,962 - Psyr_3364 0.29 +2.0
4,022,962 - Psyr_3364 0.29 -1.2
4,022,962 - Psyr_3364 0.29 +0.4
4,022,962 - Psyr_3364 0.29 +0.4
4,022,962 - Psyr_3364 0.29 -1.3
4,022,962 - Psyr_3364 0.29 -0.9
4,022,963 + Psyr_3364 0.29 +0.4
4,022,964 - Psyr_3364 0.29 +0.4
4,022,964 - Psyr_3364 0.29 +2.1
4,022,964 - Psyr_3364 0.29 -0.2
4,023,087 + Psyr_3364 0.40 -0.2
4,023,111 + Psyr_3364 0.42 -1.5
4,023,111 + Psyr_3364 0.42 -0.0
4,023,112 - Psyr_3364 0.42 +0.6
4,023,135 + Psyr_3364 0.44 -1.6
4,023,135 + Psyr_3364 0.44 +2.4
4,023,136 - Psyr_3364 0.44 +0.4
4,023,242 + Psyr_3364 0.53 +1.1
4,023,249 + Psyr_3364 0.54 +0.1
4,023,249 + Psyr_3364 0.54 -0.6
4,023,249 + Psyr_3364 0.54 +0.4
4,023,249 + Psyr_3364 0.54 -0.5
4,023,249 + Psyr_3364 0.54 -0.6
4,023,249 + Psyr_3364 0.54 -0.5
4,023,249 + Psyr_3364 0.54 -0.4
4,023,249 + Psyr_3364 0.54 -1.1
4,023,249 + Psyr_3364 0.54 -1.7
4,023,249 + Psyr_3364 0.54 +0.5
4,023,249 + Psyr_3364 0.54 -1.7
4,023,249 + Psyr_3364 0.54 -0.4
4,023,249 + Psyr_3364 0.54 +0.4
4,023,249 + Psyr_3364 0.54 +0.4
4,023,249 + Psyr_3364 0.54 -0.7
4,023,249 + Psyr_3364 0.54 -2.3
4,023,250 - Psyr_3364 0.54 +0.2
4,023,250 - Psyr_3364 0.54 +0.9
4,023,250 - Psyr_3364 0.54 +0.7
4,023,250 - Psyr_3364 0.54 -0.3
4,023,250 - Psyr_3364 0.54 +2.4
4,023,250 - Psyr_3364 0.54 +0.7
4,023,250 - Psyr_3364 0.54 -2.8
4,023,250 - Psyr_3364 0.54 +0.3
4,023,250 - Psyr_3364 0.54 -0.7
4,023,250 - Psyr_3364 0.54 -0.7
4,023,250 - Psyr_3364 0.54 +0.5
4,023,250 - Psyr_3364 0.54 -1.4
4,023,250 - Psyr_3364 0.54 +0.1
4,023,250 - Psyr_3364 0.54 -2.4
4,023,250 - Psyr_3364 0.54 +1.5
4,023,250 - Psyr_3364 0.54 +0.5
4,023,250 - Psyr_3364 0.54 -1.4
4,023,250 - Psyr_3364 0.54 -1.9
4,023,251 + Psyr_3364 0.54 -0.6
4,023,251 + Psyr_3364 0.54 +1.0
4,023,251 + Psyr_3364 0.54 +1.2
4,023,252 - Psyr_3364 0.54 -1.7
4,023,252 - Psyr_3364 0.54 -0.3
4,023,259 + Psyr_3364 0.54 +0.3
4,023,260 - Psyr_3364 0.55 +0.8
4,023,283 - Psyr_3364 0.57 +0.1
4,023,383 - Psyr_3364 0.65 +1.0
4,023,462 + Psyr_3364 0.72 -0.3

Or see this region's nucleotide sequence