Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3233

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3232 and Psyr_3233 are separated by 250 nucleotidesPsyr_3233 and Psyr_3234 are separated by 19 nucleotidesPsyr_3234 and Psyr_3235 are separated by 124 nucleotides Psyr_3232: Psyr_3232 - Polysaccharide export protein, at 3,871,564 to 3,872,652 _3232 Psyr_3233: Psyr_3233 - FMN reductase, at 3,872,903 to 3,873,484 _3233 Psyr_3234: Psyr_3234 - Lysine exporter protein (LYSE/YGGA), at 3,873,504 to 3,874,112 _3234 Psyr_3235: Psyr_3235 - lipoprotein, putative, at 3,874,237 to 3,874,518 _3235 Position (kb) 3872 3873 3874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3871.915 kb on + strand, within Psyr_3232at 3871.915 kb on + strand, within Psyr_3232at 3871.916 kb on - strand, within Psyr_3232at 3871.916 kb on - strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.928 kb on + strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3871.929 kb on - strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.002 kb on + strand, within Psyr_3232at 3872.003 kb on - strand, within Psyr_3232at 3872.003 kb on - strand, within Psyr_3232at 3872.038 kb on + strand, within Psyr_3232at 3872.039 kb on - strand, within Psyr_3232at 3872.273 kb on - strand, within Psyr_3232at 3872.308 kb on + strand, within Psyr_3232at 3872.308 kb on + strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.309 kb on - strand, within Psyr_3232at 3872.431 kb on + strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.432 kb on - strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.438 kb on + strand, within Psyr_3232at 3872.625 kb on - strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.860 kb on + strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.861 kb on - strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.878 kb on + strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.879 kb on - strandat 3872.958 kb on + strandat 3872.959 kb on - strandat 3873.004 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.131 kb on + strand, within Psyr_3233at 3873.132 kb on - strand, within Psyr_3233at 3873.132 kb on - strand, within Psyr_3233at 3873.354 kb on + strand, within Psyr_3233at 3873.483 kb on - strandat 3873.483 kb on - strandat 3873.570 kb on - strand, within Psyr_3234at 3873.570 kb on - strand, within Psyr_3234at 3873.573 kb on + strand, within Psyr_3234at 3873.685 kb on + strand, within Psyr_3234at 3873.686 kb on - strand, within Psyr_3234at 3873.691 kb on + strand, within Psyr_3234at 3873.692 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.710 kb on - strand, within Psyr_3234at 3873.853 kb on + strand, within Psyr_3234at 3873.862 kb on + strand, within Psyr_3234at 3873.863 kb on - strand, within Psyr_3234at 3873.877 kb on + strand, within Psyr_3234at 3873.891 kb on - strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.892 kb on + strand, within Psyr_3234at 3873.893 kb on - strand, within Psyr_3234at 3874.052 kb on + strandat 3874.052 kb on + strandat 3874.140 kb on + strandat 3874.140 kb on + strandat 3874.141 kb on - strandat 3874.239 kb on - strandat 3874.356 kb on - strand, within Psyr_3235

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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3,871,915 + Psyr_3232 0.32 +1.9
3,871,915 + Psyr_3232 0.32 -0.1
3,871,916 - Psyr_3232 0.32 +2.1
3,871,916 - Psyr_3232 0.32 -1.0
3,871,928 + Psyr_3232 0.33 -0.0
3,871,928 + Psyr_3232 0.33 -2.3
3,871,928 + Psyr_3232 0.33 +0.9
3,871,928 + Psyr_3232 0.33 -0.2
3,871,928 + Psyr_3232 0.33 +0.4
3,871,929 - Psyr_3232 0.34 +1.8
3,871,929 - Psyr_3232 0.34 -0.2
3,871,929 - Psyr_3232 0.34 -0.2
3,872,002 + Psyr_3232 0.40 +0.1
3,872,002 + Psyr_3232 0.40 -0.5
3,872,002 + Psyr_3232 0.40 -0.5
3,872,003 - Psyr_3232 0.40 +0.3
3,872,003 - Psyr_3232 0.40 +0.4
3,872,038 + Psyr_3232 0.44 +3.1
3,872,039 - Psyr_3232 0.44 -0.3
3,872,273 - Psyr_3232 0.65 +0.3
3,872,308 + Psyr_3232 0.68 -0.2
3,872,308 + Psyr_3232 0.68 +1.8
3,872,309 - Psyr_3232 0.68 -0.0
3,872,309 - Psyr_3232 0.68 +0.3
3,872,309 - Psyr_3232 0.68 -0.2
3,872,309 - Psyr_3232 0.68 -2.6
3,872,431 + Psyr_3232 0.80 +0.6
3,872,432 - Psyr_3232 0.80 -0.9
3,872,432 - Psyr_3232 0.80 -0.9
3,872,432 - Psyr_3232 0.80 -2.1
3,872,438 + Psyr_3232 0.80 -0.2
3,872,438 + Psyr_3232 0.80 +0.5
3,872,438 + Psyr_3232 0.80 -0.1
3,872,438 + Psyr_3232 0.80 +0.2
3,872,438 + Psyr_3232 0.80 +0.1
3,872,438 + Psyr_3232 0.80 +0.7
3,872,438 + Psyr_3232 0.80 +0.9
3,872,438 + Psyr_3232 0.80 +0.4
3,872,625 - -1.2
3,872,860 + +1.1
3,872,860 + +0.0
3,872,860 + +0.4
3,872,860 + +0.8
3,872,860 + -0.8
3,872,860 + +0.4
3,872,861 - -0.3
3,872,861 - -0.2
3,872,861 - -1.6
3,872,861 - -0.0
3,872,861 - +2.0
3,872,861 - +0.9
3,872,878 + -1.1
3,872,878 + -0.2
3,872,878 + +0.3
3,872,878 + +1.6
3,872,879 - +0.4
3,872,879 - -0.4
3,872,879 - +0.4
3,872,879 - -0.5
3,872,879 - +1.0
3,872,958 + -1.1
3,872,959 - -1.6
3,873,004 + Psyr_3233 0.17 -0.1
3,873,131 + Psyr_3233 0.39 -1.4
3,873,131 + Psyr_3233 0.39 -0.7
3,873,131 + Psyr_3233 0.39 -0.6
3,873,132 - Psyr_3233 0.39 -0.3
3,873,132 - Psyr_3233 0.39 -2.4
3,873,354 + Psyr_3233 0.77 -0.5
3,873,483 - +0.6
3,873,483 - -1.8
3,873,570 - Psyr_3234 0.11 -0.7
3,873,570 - Psyr_3234 0.11 +0.1
3,873,573 + Psyr_3234 0.11 +0.2
3,873,685 + Psyr_3234 0.30 -1.6
3,873,686 - Psyr_3234 0.30 +1.0
3,873,691 + Psyr_3234 0.31 -0.3
3,873,692 - Psyr_3234 0.31 +0.6
3,873,710 - Psyr_3234 0.34 +0.2
3,873,710 - Psyr_3234 0.34 -0.9
3,873,710 - Psyr_3234 0.34 -0.2
3,873,710 - Psyr_3234 0.34 +0.5
3,873,853 + Psyr_3234 0.57 -1.6
3,873,862 + Psyr_3234 0.59 -1.1
3,873,863 - Psyr_3234 0.59 +1.1
3,873,877 + Psyr_3234 0.61 -0.5
3,873,891 - Psyr_3234 0.64 +2.5
3,873,892 + Psyr_3234 0.64 +1.1
3,873,892 + Psyr_3234 0.64 +2.4
3,873,892 + Psyr_3234 0.64 +0.1
3,873,893 - Psyr_3234 0.64 -1.0
3,874,052 + -0.8
3,874,052 + +0.6
3,874,140 + -0.5
3,874,140 + -1.8
3,874,141 - +0.7
3,874,239 - -2.7
3,874,356 - Psyr_3235 0.42 -4.2

Or see this region's nucleotide sequence