Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2747

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2746 and Psyr_2747 are separated by 44 nucleotidesPsyr_2747 and Psyr_2748 overlap by 4 nucleotides Psyr_2746: Psyr_2746 - L-lysine 6-monooxygenase, putative, at 3,333,777 to 3,335,096 _2746 Psyr_2747: Psyr_2747 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 3,335,141 to 3,336,121 _2747 Psyr_2748: Psyr_2748 - FAD dependent oxidoreductase, at 3,336,118 to 3,337,272 _2748 Position (kb) 3335 3336 3337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3334.168 kb on + strand, within Psyr_2746at 3334.168 kb on + strand, within Psyr_2746at 3334.168 kb on + strand, within Psyr_2746at 3334.169 kb on - strand, within Psyr_2746at 3334.169 kb on - strand, within Psyr_2746at 3334.175 kb on - strand, within Psyr_2746at 3334.175 kb on - strand, within Psyr_2746at 3334.175 kb on - strand, within Psyr_2746at 3334.213 kb on + strand, within Psyr_2746at 3334.214 kb on - strand, within Psyr_2746at 3334.261 kb on + strand, within Psyr_2746at 3334.261 kb on + strand, within Psyr_2746at 3334.262 kb on - strand, within Psyr_2746at 3334.262 kb on - strand, within Psyr_2746at 3334.324 kb on + strand, within Psyr_2746at 3334.324 kb on + strand, within Psyr_2746at 3334.324 kb on + strand, within Psyr_2746at 3334.651 kb on - strand, within Psyr_2746at 3334.731 kb on + strand, within Psyr_2746at 3334.731 kb on + strand, within Psyr_2746at 3334.757 kb on - strand, within Psyr_2746at 3334.831 kb on + strand, within Psyr_2746at 3334.831 kb on + strand, within Psyr_2746at 3334.831 kb on + strand, within Psyr_2746at 3334.832 kb on - strand, within Psyr_2746at 3334.832 kb on - strand, within Psyr_2746at 3334.832 kb on - strand, within Psyr_2746at 3334.832 kb on - strand, within Psyr_2746at 3334.887 kb on + strand, within Psyr_2746at 3334.887 kb on + strand, within Psyr_2746at 3334.888 kb on - strand, within Psyr_2746at 3334.888 kb on - strand, within Psyr_2746at 3335.111 kb on + strandat 3335.112 kb on - strandat 3335.122 kb on + strandat 3335.142 kb on + strandat 3335.320 kb on - strand, within Psyr_2747at 3335.320 kb on - strand, within Psyr_2747at 3335.320 kb on - strand, within Psyr_2747at 3335.320 kb on - strand, within Psyr_2747at 3335.346 kb on + strand, within Psyr_2747at 3335.346 kb on + strand, within Psyr_2747at 3335.346 kb on + strand, within Psyr_2747at 3336.308 kb on + strand, within Psyr_2748at 3336.309 kb on - strand, within Psyr_2748at 3336.309 kb on - strand, within Psyr_2748at 3336.309 kb on - strand, within Psyr_2748at 3336.362 kb on + strand, within Psyr_2748at 3336.363 kb on - strand, within Psyr_2748at 3336.363 kb on - strand, within Psyr_2748at 3336.363 kb on - strand, within Psyr_2748at 3336.363 kb on - strand, within Psyr_2748at 3336.363 kb on - strand, within Psyr_2748at 3336.525 kb on + strand, within Psyr_2748at 3336.548 kb on + strand, within Psyr_2748at 3336.549 kb on - strand, within Psyr_2748at 3336.549 kb on - strand, within Psyr_2748at 3336.549 kb on - strand, within Psyr_2748at 3336.951 kb on - strand, within Psyr_2748at 3337.035 kb on - strand, within Psyr_2748at 3337.077 kb on - strand, within Psyr_2748at 3337.112 kb on + strand, within Psyr_2748at 3337.112 kb on + strand, within Psyr_2748at 3337.113 kb on - strand, within Psyr_2748at 3337.113 kb on - strand, within Psyr_2748at 3337.113 kb on - strand, within Psyr_2748

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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3,334,168 + Psyr_2746 0.30 -1.1
3,334,168 + Psyr_2746 0.30 -1.8
3,334,168 + Psyr_2746 0.30 +0.5
3,334,169 - Psyr_2746 0.30 -1.4
3,334,169 - Psyr_2746 0.30 -0.4
3,334,175 - Psyr_2746 0.30 +0.4
3,334,175 - Psyr_2746 0.30 -1.2
3,334,175 - Psyr_2746 0.30 +0.2
3,334,213 + Psyr_2746 0.33 -0.6
3,334,214 - Psyr_2746 0.33 +0.6
3,334,261 + Psyr_2746 0.37 -0.8
3,334,261 + Psyr_2746 0.37 -2.2
3,334,262 - Psyr_2746 0.37 +1.2
3,334,262 - Psyr_2746 0.37 +0.8
3,334,324 + Psyr_2746 0.41 +0.6
3,334,324 + Psyr_2746 0.41 -0.6
3,334,324 + Psyr_2746 0.41 -0.5
3,334,651 - Psyr_2746 0.66 -1.6
3,334,731 + Psyr_2746 0.72 +0.2
3,334,731 + Psyr_2746 0.72 -0.7
3,334,757 - Psyr_2746 0.74 +0.4
3,334,831 + Psyr_2746 0.80 +0.0
3,334,831 + Psyr_2746 0.80 +1.6
3,334,831 + Psyr_2746 0.80 +0.4
3,334,832 - Psyr_2746 0.80 +0.4
3,334,832 - Psyr_2746 0.80 -0.2
3,334,832 - Psyr_2746 0.80 +0.7
3,334,832 - Psyr_2746 0.80 +3.4
3,334,887 + Psyr_2746 0.84 +0.7
3,334,887 + Psyr_2746 0.84 -0.6
3,334,888 - Psyr_2746 0.84 -0.9
3,334,888 - Psyr_2746 0.84 +0.1
3,335,111 + +0.3
3,335,112 - +1.2
3,335,122 + +1.1
3,335,142 + +1.7
3,335,320 - Psyr_2747 0.18 -0.3
3,335,320 - Psyr_2747 0.18 -1.0
3,335,320 - Psyr_2747 0.18 -1.8
3,335,320 - Psyr_2747 0.18 -2.2
3,335,346 + Psyr_2747 0.21 -0.7
3,335,346 + Psyr_2747 0.21 -0.3
3,335,346 + Psyr_2747 0.21 +0.5
3,336,308 + Psyr_2748 0.16 -0.9
3,336,309 - Psyr_2748 0.17 -0.8
3,336,309 - Psyr_2748 0.17 +0.5
3,336,309 - Psyr_2748 0.17 +1.0
3,336,362 + Psyr_2748 0.21 -0.0
3,336,363 - Psyr_2748 0.21 +0.8
3,336,363 - Psyr_2748 0.21 -1.7
3,336,363 - Psyr_2748 0.21 +0.8
3,336,363 - Psyr_2748 0.21 +0.1
3,336,363 - Psyr_2748 0.21 -0.4
3,336,525 + Psyr_2748 0.35 -0.4
3,336,548 + Psyr_2748 0.37 +0.6
3,336,549 - Psyr_2748 0.37 -2.8
3,336,549 - Psyr_2748 0.37 -0.9
3,336,549 - Psyr_2748 0.37 -2.8
3,336,951 - Psyr_2748 0.72 -1.0
3,337,035 - Psyr_2748 0.79 +0.9
3,337,077 - Psyr_2748 0.83 -0.6
3,337,112 + Psyr_2748 0.86 +0.8
3,337,112 + Psyr_2748 0.86 +0.2
3,337,113 - Psyr_2748 0.86 -1.8
3,337,113 - Psyr_2748 0.86 +0.2
3,337,113 - Psyr_2748 0.86 -0.1

Or see this region's nucleotide sequence