Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2501

Experiment: KB with Naringin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Naringin 250 ug/ml
2,910,775	+		Psyr_2499	0.34	-0.6
2,910,890	-		Psyr_2499	0.53	-2.5
2,910,890	-		Psyr_2499	0.53	-0.2
2,910,909	-		Psyr_2499	0.56	-1.6
2,910,975	+		Psyr_2499	0.66	-0.3
2,910,976	-		Psyr_2499	0.66	-0.4
2,910,983	+		Psyr_2499	0.67	-0.6
2,910,983	+		Psyr_2499	0.67	+0.7
2,910,984	-		Psyr_2499	0.68	+0.6
2,911,015	+		Psyr_2499	0.73	-0.9
2,911,016	-		Psyr_2499	0.73	+0.5
2,911,016	-		Psyr_2499	0.73	-0.6
2,911,016	-		Psyr_2499	0.73	-0.7
2,911,123	+				-2.0
2,911,127	-				+1.6
2,911,525	+		Psyr_2500	0.63	+1.5
2,911,715	+				+1.2
2,911,716	-				-2.7
2,911,749	+				+0.5
2,911,750	-				-0.3
2,911,956	+		Psyr_2501	0.41	-1.1
2,911,956	+		Psyr_2501	0.41	-1.1
2,911,956	+		Psyr_2501	0.41	+0.5
2,911,956	+		Psyr_2501	0.41	-0.3
2,912,258	-				+0.1
2,912,385	+		Psyr_2502	0.27	-0.3
2,912,538	+		Psyr_2502	0.69	-0.9
2,912,538	+		Psyr_2502	0.69	+0.3
2,912,539	-		Psyr_2502	0.69	-1.7
2,912,539	-		Psyr_2502	0.69	-0.9
2,912,586	+		Psyr_2502	0.82	+1.5
2,912,587	-		Psyr_2502	0.83	-0.3
2,912,587	-		Psyr_2502	0.83	+0.4
2,912,587	-		Psyr_2502	0.83	-1.2
2,912,637	-				+1.4
2,912,637	-				+1.2
2,912,637	-				-0.6
2,912,778	+				-0.2
2,912,831	+				+0.4
2,912,831	+				-3.3
2,912,831	+				-0.5
2,912,831	+				-2.1
2,912,831	+				-0.6
2,912,831	+				-1.6
2,912,831	+				-1.1
2,912,831	+				-2.4
2,912,831	+				+1.7
2,912,831	+				-2.3
2,912,831	+				+0.3
2,912,831	+				-3.1
2,912,831	+				-3.3
2,912,832	-				-1.8
2,912,832	-				-0.6
2,912,832	-				-0.2
2,912,832	-				-0.4
2,912,832	-				-0.1
2,912,832	-				+0.4
2,912,832	-				+0.2
2,912,832	-				-0.4
2,912,832	-				+0.9
2,912,851	+				-1.4
2,913,029	+				-0.4
2,913,103	+				-0.2
2,913,103	+				+0.2
2,913,165	+		Psyr_2503	0.15	+3.0