Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2492

Experiment: KB with Naringin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Naringin 250 ug/ml
2,899,144	+		Psyr_2491	0.66	+0.5
2,899,144	+		Psyr_2491	0.66	-0.8
2,899,145	-		Psyr_2491	0.66	+1.0
2,899,145	-		Psyr_2491	0.66	-0.4
2,899,145	-		Psyr_2491	0.66	-0.3
2,899,145	-		Psyr_2491	0.66	-2.7
2,899,184	-		Psyr_2491	0.68	-0.4
2,899,184	-		Psyr_2491	0.68	-0.1
2,899,184	-		Psyr_2491	0.68	+0.7
2,899,246	+		Psyr_2491	0.71	-0.6
2,899,246	+		Psyr_2491	0.71	-0.8
2,899,247	-		Psyr_2491	0.71	-3.5
2,899,247	-		Psyr_2491	0.71	+1.0
2,899,247	-		Psyr_2491	0.71	+0.0
2,899,247	-		Psyr_2491	0.71	-0.6
2,899,269	-		Psyr_2491	0.72	+2.2
2,899,275	+		Psyr_2491	0.72	+1.4
2,899,275	+		Psyr_2491	0.72	+1.2
2,899,276	-		Psyr_2491	0.72	-2.7
2,899,276	-		Psyr_2491	0.72	-0.4
2,899,367	-		Psyr_2491	0.76	+0.7
2,899,367	-		Psyr_2491	0.76	+1.1
2,899,469	-		Psyr_2491	0.81	+0.2
2,899,697	-				+0.9
2,899,992	-				+1.3
2,900,083	+				+0.4
2,900,084	-				-1.0
2,900,154	-				-2.1
2,900,183	+				-0.3
2,900,183	+				+0.0
2,900,184	-				+0.1
2,900,222	+		Psyr_2492	0.11	-0.7
2,900,222	+		Psyr_2492	0.11	+0.6
2,900,222	+		Psyr_2492	0.11	-1.4
2,900,453	+		Psyr_2492	0.19	-0.3
2,900,454	-		Psyr_2492	0.19	+0.0
2,900,514	+		Psyr_2492	0.22	-0.5
2,900,514	+		Psyr_2492	0.22	-0.4
2,900,634	-		Psyr_2492	0.26	-1.2
2,900,634	-		Psyr_2492	0.26	+0.3
2,900,634	-		Psyr_2492	0.26	-0.6
2,900,849	+		Psyr_2492	0.34	-0.6
2,900,849	+		Psyr_2492	0.34	-0.7
2,900,850	-		Psyr_2492	0.34	-0.6
2,901,007	+		Psyr_2492	0.40	+0.2
2,901,255	+		Psyr_2492	0.49	+1.2
2,901,275	+		Psyr_2492	0.49	+1.0
2,901,275	+		Psyr_2492	0.49	-0.7
2,901,275	+		Psyr_2492	0.49	+0.2
2,901,276	-		Psyr_2492	0.49	+2.6
2,901,279	-		Psyr_2492	0.49	+1.0
2,901,355	+		Psyr_2492	0.52	-0.3
2,901,435	+		Psyr_2492	0.55	-1.6
2,901,524	+		Psyr_2492	0.58	+0.2
2,901,525	-		Psyr_2492	0.58	+1.0
2,901,525	-		Psyr_2492	0.58	+0.8
2,901,574	+		Psyr_2492	0.60	+0.5
2,901,574	+		Psyr_2492	0.60	-1.2
2,901,574	+		Psyr_2492	0.60	+0.6
2,901,575	-		Psyr_2492	0.60	+0.4
2,901,670	+		Psyr_2492	0.64	-1.5
2,901,670	+		Psyr_2492	0.64	+0.9
2,901,670	+		Psyr_2492	0.64	+0.2
2,901,671	-		Psyr_2492	0.64	-0.2
2,901,671	-		Psyr_2492	0.64	+1.8
2,901,861	-		Psyr_2492	0.71	-1.9
2,901,863	+		Psyr_2492	0.71	+0.9
2,901,863	+		Psyr_2492	0.71	-1.1
2,901,863	+		Psyr_2492	0.71	-0.3
2,901,863	+		Psyr_2492	0.71	-0.0
2,901,879	-		Psyr_2492	0.71	+2.4
2,901,879	-		Psyr_2492	0.71	-1.0
2,901,913	+		Psyr_2492	0.73	-0.2
2,901,913	+		Psyr_2492	0.73	-1.1
2,901,913	+		Psyr_2492	0.73	-0.2
2,901,914	-		Psyr_2492	0.73	-0.8
2,901,914	-		Psyr_2492	0.73	+0.3
2,902,110	+		Psyr_2492	0.80	+0.0
2,902,132	+		Psyr_2492	0.81	-1.6
2,902,132	+		Psyr_2492	0.81	+0.4
2,902,133	-		Psyr_2492	0.81	-0.2
2,902,133	-		Psyr_2492	0.81	-0.6
2,902,243	-		Psyr_2492	0.85	-0.4
2,902,444	-				+1.1
2,902,480	+				-0.3
2,902,480	+				-0.9
2,902,480	+				-1.1
2,902,481	-				-0.8
2,902,486	+				+1.1
2,902,486	+				+1.7
2,902,486	+				+1.4
2,902,486	+				-0.9
2,902,486	+				+0.2
2,902,487	-				+1.0
2,902,487	-				+1.1
2,902,487	-				+0.0
2,902,487	-				-0.5
2,902,487	-				-0.1
2,902,609	+				+0.4
2,902,613	-				-1.1
2,902,731	-				+0.6
2,902,864	-				-1.5
2,902,874	+				+0.2
2,902,874	+				-0.2
2,902,883	+				+0.5
2,902,884	-				-0.8
2,902,899	-				+0.3
2,903,000	+				+2.0
2,903,090	+		Psyr_2493	0.13	+0.4
2,903,090	+		Psyr_2493	0.13	-1.3
2,903,137	-		Psyr_2493	0.17	+0.3
2,903,143	+		Psyr_2493	0.18	+0.0
2,903,390	+		Psyr_2493	0.38	+0.3
2,903,390	+		Psyr_2493	0.38	+0.9
2,903,645	+		Psyr_2493	0.59	+2.0
2,903,645	+		Psyr_2493	0.59	-0.3