Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1701

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1700 and Psyr_1701 are separated by 27 nucleotidesPsyr_1701 and Psyr_1702 are separated by 433 nucleotides Psyr_1700: Psyr_1700 - Glycosyl hydrolase, BNR repeat protein, at 1,907,992 to 1,909,101 _1700 Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Psyr_1702: Psyr_1702 - regulatory protein, LuxR, at 1,911,953 to 1,912,669 _1702 Position (kb) 1909 1910 1911 1912Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1908.193 kb on + strand, within Psyr_1700at 1908.194 kb on - strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.410 kb on + strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.781 kb on + strand, within Psyr_1700at 1909.099 kb on + strandat 1909.099 kb on + strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.189 kb on - strandat 1909.360 kb on - strandat 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.415 kb on - strandat 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strandat 1909.454 kb on - strand, within Psyr_1701at 1909.454 kb on - strand, within Psyr_1701at 1909.564 kb on + strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.775 kb on - strand, within Psyr_1701at 1909.899 kb on + strand, within Psyr_1701at 1910.196 kb on + strand, within Psyr_1701at 1910.531 kb on - strand, within Psyr_1701at 1910.818 kb on + strand, within Psyr_1701at 1910.818 kb on + strand, within Psyr_1701at 1910.819 kb on - strand, within Psyr_1701at 1910.819 kb on - strand, within Psyr_1701at 1910.868 kb on + strand, within Psyr_1701at 1910.868 kb on + strand, within Psyr_1701at 1910.869 kb on - strand, within Psyr_1701at 1910.869 kb on - strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.146 kb on + strand, within Psyr_1701at 1911.146 kb on + strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.278 kb on - strand, within Psyr_1701at 1911.278 kb on - strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.688 kb on - strandat 1911.695 kb on + strandat 1911.738 kb on + strandat 1911.739 kb on - strandat 1911.762 kb on + strandat 1911.762 kb on + strandat 1911.890 kb on + strandat 1912.064 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.308 kb on - strand, within Psyr_1702at 1912.336 kb on - strand, within Psyr_1702at 1912.373 kb on - strand, within Psyr_1702at 1912.432 kb on + strand, within Psyr_1702at 1912.432 kb on + strand, within Psyr_1702at 1912.433 kb on - strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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1,908,193 + Psyr_1700 0.18 -0.1
1,908,194 - Psyr_1700 0.18 +0.0
1,908,285 + Psyr_1700 0.26 +2.0
1,908,286 - Psyr_1700 0.26 +0.1
1,908,286 - Psyr_1700 0.26 -0.2
1,908,410 + Psyr_1700 0.38 +0.4
1,908,411 - Psyr_1700 0.38 -0.5
1,908,411 - Psyr_1700 0.38 +0.6
1,908,607 + Psyr_1700 0.55 -0.6
1,908,607 + Psyr_1700 0.55 -0.6
1,908,781 + Psyr_1700 0.71 -0.9
1,909,099 + -0.1
1,909,099 + +0.4
1,909,100 - -0.8
1,909,100 - -0.2
1,909,100 - -0.4
1,909,189 - -0.6
1,909,360 - -0.2
1,909,414 + Psyr_1701 0.12 +0.1
1,909,414 + Psyr_1701 0.12 -0.6
1,909,414 + Psyr_1701 0.12 +0.8
1,909,414 + Psyr_1701 0.12 +0.8
1,909,414 + Psyr_1701 0.12 +0.5
1,909,414 + Psyr_1701 0.12 +0.6
1,909,414 + Psyr_1701 0.12 +1.1
1,909,415 - +2.2
1,909,415 - Psyr_1701 0.12 +1.1
1,909,415 - Psyr_1701 0.12 -0.6
1,909,415 - Psyr_1701 0.12 +0.8
1,909,415 - Psyr_1701 0.12 +0.0
1,909,415 - Psyr_1701 0.12 +0.2
1,909,415 - Psyr_1701 0.12 +0.4
1,909,415 - Psyr_1701 0.12 -0.2
1,909,415 - Psyr_1701 0.12 +0.8
1,909,415 - Psyr_1701 0.12 -0.2
1,909,415 - Psyr_1701 0.12 +0.5
1,909,415 - Psyr_1701 0.12 +0.4
1,909,453 + Psyr_1701 0.14 +0.5
1,909,453 + Psyr_1701 0.14 +1.4
1,909,453 + Psyr_1701 0.14 +0.4
1,909,453 + Psyr_1701 0.14 +0.4
1,909,453 + -0.2
1,909,454 - Psyr_1701 0.14 +1.0
1,909,454 - Psyr_1701 0.14 -0.1
1,909,564 + Psyr_1701 0.18 +0.3
1,909,565 - Psyr_1701 0.18 +0.2
1,909,565 - Psyr_1701 0.18 +0.0
1,909,565 - Psyr_1701 0.18 +0.5
1,909,774 + Psyr_1701 0.27 -0.3
1,909,774 + Psyr_1701 0.27 -1.1
1,909,774 + Psyr_1701 0.27 -2.4
1,909,774 + Psyr_1701 0.27 -0.1
1,909,774 + Psyr_1701 0.27 +0.0
1,909,775 - Psyr_1701 0.27 +0.4
1,909,899 + Psyr_1701 0.32 -0.6
1,910,196 + Psyr_1701 0.45 +0.3
1,910,531 - Psyr_1701 0.59 -1.8
1,910,818 + Psyr_1701 0.71 +1.1
1,910,818 + Psyr_1701 0.71 -0.2
1,910,819 - Psyr_1701 0.71 +0.0
1,910,819 - Psyr_1701 0.71 +1.7
1,910,868 + Psyr_1701 0.73 -0.6
1,910,868 + Psyr_1701 0.73 -0.4
1,910,869 - Psyr_1701 0.73 -0.1
1,910,869 - Psyr_1701 0.73 -0.2
1,911,031 + Psyr_1701 0.80 -0.9
1,911,146 + Psyr_1701 0.84 -0.7
1,911,146 + Psyr_1701 0.84 -0.6
1,911,147 - Psyr_1701 0.84 +1.0
1,911,147 - Psyr_1701 0.84 -1.6
1,911,147 - Psyr_1701 0.84 +0.1
1,911,220 + Psyr_1701 0.87 +0.8
1,911,221 - Psyr_1701 0.87 +0.6
1,911,221 - Psyr_1701 0.87 -0.0
1,911,221 - Psyr_1701 0.87 +0.8
1,911,221 - Psyr_1701 0.87 +1.0
1,911,221 - Psyr_1701 0.87 +0.5
1,911,221 - Psyr_1701 0.87 -0.1
1,911,227 - Psyr_1701 0.88 +1.1
1,911,277 + Psyr_1701 0.90 -1.4
1,911,278 - Psyr_1701 0.90 +0.4
1,911,278 - Psyr_1701 0.90 +0.0
1,911,280 + Psyr_1701 0.90 -0.3
1,911,280 + Psyr_1701 0.90 +1.4
1,911,280 + Psyr_1701 0.90 -1.2
1,911,280 + Psyr_1701 0.90 +0.4
1,911,688 - -2.0
1,911,695 + +0.2
1,911,738 + -0.5
1,911,739 - -0.9
1,911,762 + +0.7
1,911,762 + -0.2
1,911,890 + -0.1
1,912,064 + Psyr_1702 0.15 +0.0
1,912,066 + Psyr_1702 0.16 +0.2
1,912,066 + Psyr_1702 0.16 -0.9
1,912,067 - Psyr_1702 0.16 -2.4
1,912,147 + Psyr_1702 0.27 +0.6
1,912,147 + Psyr_1702 0.27 +0.6
1,912,147 + Psyr_1702 0.27 +0.0
1,912,216 - Psyr_1702 0.37 -1.6
1,912,308 - Psyr_1702 0.50 -0.3
1,912,336 - Psyr_1702 0.53 -1.2
1,912,373 - Psyr_1702 0.59 -0.3
1,912,432 + Psyr_1702 0.67 +0.1
1,912,432 + Psyr_1702 0.67 -0.3
1,912,433 - Psyr_1702 0.67 -2.2
1,912,508 + Psyr_1702 0.77 +0.0
1,912,508 + Psyr_1702 0.77 -0.9
1,912,508 + Psyr_1702 0.77 -1.4
1,912,508 + Psyr_1702 0.77 -0.1
1,912,508 + Psyr_1702 0.77 +0.2
1,912,509 - Psyr_1702 0.78 -1.0
1,912,509 - Psyr_1702 0.78 -2.1
1,912,513 - Psyr_1702 0.78 -3.6
1,912,513 - Psyr_1702 0.78 -0.7

Or see this region's nucleotide sequence