Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1506 and Psyr_1507 are separated by 338 nucleotides Psyr_1507 and Psyr_1508 are separated by 104 nucleotides Psyr_1508 and Psyr_1509 are separated by 558 nucleotides
Psyr_1506: Psyr_1506 - Cation efflux protein, at 1,692,284 to 1,693,237
_1506
Psyr_1507: Psyr_1507 - hypothetical protein, at 1,693,576 to 1,694,016
_1507
Psyr_1508: Psyr_1508 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 1,694,121 to 1,695,080
_1508
Psyr_1509: Psyr_1509 - PilM protein, putative, at 1,695,639 to 1,696,079
_1509
Position (kb) 1694
1695
1696 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1693.141 kb on + strand, within Psyr_1506 at 1693.142 kb on - strand at 1693.142 kb on - strand at 1693.193 kb on - strand at 1693.231 kb on + strand at 1693.231 kb on + strand at 1693.232 kb on - strand at 1693.232 kb on - strand at 1693.232 kb on - strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.294 kb on - strand at 1693.294 kb on - strand at 1693.302 kb on + strand at 1693.302 kb on + strand at 1693.302 kb on + strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.306 kb on - strand at 1693.348 kb on + strand at 1693.425 kb on + strand at 1693.496 kb on - strand at 1693.496 kb on - strand at 1693.500 kb on - strand at 1693.500 kb on - strand at 1693.500 kb on - strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.543 kb on - strand at 1693.543 kb on - strand at 1693.543 kb on - strand at 1693.548 kb on - strand at 1693.556 kb on - strand at 1693.575 kb on + strand at 1693.575 kb on + strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.581 kb on + strand at 1693.581 kb on + strand at 1693.582 kb on - strand at 1693.582 kb on - strand at 1693.582 kb on - strand at 1693.603 kb on + strand at 1693.604 kb on - strand at 1693.604 kb on - strand at 1693.714 kb on + strand, within Psyr_1507 at 1693.714 kb on + strand, within Psyr_1507 at 1693.715 kb on - strand, within Psyr_1507 at 1693.762 kb on + strand, within Psyr_1507 at 1693.792 kb on + strand, within Psyr_1507 at 1693.792 kb on + strand, within Psyr_1507 at 1693.793 kb on - strand, within Psyr_1507 at 1693.886 kb on + strand, within Psyr_1507 at 1693.886 kb on + strand, within Psyr_1507 at 1693.983 kb on + strand at 1693.983 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.025 kb on - strand at 1694.025 kb on - strand at 1694.025 kb on - strand at 1694.088 kb on + strand at 1694.088 kb on + strand at 1694.089 kb on - strand at 1694.089 kb on - strand at 1694.089 kb on - strand at 1694.091 kb on + strand at 1694.091 kb on + strand at 1694.092 kb on - strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.098 kb on - strand at 1694.098 kb on - strand at 1694.113 kb on + strand at 1694.114 kb on - strand at 1694.114 kb on - strand at 1694.253 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.678 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.763 kb on - strand, within Psyr_1508 at 1694.763 kb on - strand, within Psyr_1508 at 1694.807 kb on + strand, within Psyr_1508 at 1694.808 kb on - strand, within Psyr_1508 at 1694.859 kb on + strand, within Psyr_1508 at 1694.859 kb on + strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.943 kb on - strand, within Psyr_1508 at 1695.024 kb on + strand at 1695.024 kb on + strand at 1695.024 kb on + strand at 1695.025 kb on - strand at 1695.025 kb on - strand at 1695.025 kb on - strand at 1695.025 kb on - strand at 1695.065 kb on + strand at 1695.075 kb on + strand at 1695.075 kb on + strand at 1695.114 kb on - strand at 1695.131 kb on + strand at 1695.132 kb on - strand at 1695.132 kb on - strand at 1695.132 kb on - strand at 1695.140 kb on + strand at 1695.140 kb on + strand at 1695.140 kb on + strand at 1695.144 kb on + strand at 1695.144 kb on + strand at 1695.144 kb on + strand at 1695.144 kb on + strand at 1695.145 kb on - strand at 1695.185 kb on + strand at 1695.185 kb on + strand at 1695.186 kb on - strand at 1695.210 kb on + strand at 1695.211 kb on - strand at 1695.211 kb on - strand at 1695.211 kb on - strand at 1695.242 kb on + strand at 1695.242 kb on + strand at 1695.248 kb on + strand at 1695.249 kb on - strand at 1695.249 kb on - strand at 1695.347 kb on + strand at 1695.347 kb on + strand at 1695.347 kb on + strand at 1695.347 kb on + strand at 1695.348 kb on - strand at 1695.348 kb on - strand at 1695.348 kb on - strand at 1695.405 kb on + strand at 1695.414 kb on + strand at 1695.415 kb on - strand at 1695.432 kb on + strand at 1695.433 kb on - strand at 1695.433 kb on - strand at 1695.446 kb on - strand at 1695.494 kb on + strand at 1695.495 kb on - strand at 1695.495 kb on - strand at 1695.554 kb on + strand at 1695.555 kb on - strand at 1695.568 kb on + strand at 1695.569 kb on - strand at 1695.569 kb on - strand at 1695.669 kb on + strand at 1695.814 kb on + strand, within Psyr_1509 at 1695.814 kb on + strand, within Psyr_1509 at 1695.863 kb on - strand, within Psyr_1509 at 1695.922 kb on + strand, within Psyr_1509 at 1695.922 kb on + strand, within Psyr_1509 at 1695.922 kb on + strand, within Psyr_1509 at 1695.923 kb on - strand, within Psyr_1509 at 1695.923 kb on - strand, within Psyr_1509 at 1695.928 kb on + strand, within Psyr_1509 at 1695.950 kb on - strand, within Psyr_1509 at 1695.962 kb on + strand, within Psyr_1509 at 1695.963 kb on - strand, within Psyr_1509 at 1695.963 kb on - strand, within Psyr_1509 at 1695.984 kb on + strand, within Psyr_1509 at 1696.025 kb on - strand, within Psyr_1509 at 1696.046 kb on + strand at 1696.046 kb on + strand at 1696.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 1,693,141 + Psyr_1506 0.90 +0.9 1,693,142 - -1.2 1,693,142 - -0.7 1,693,193 - +1.0 1,693,231 + +0.9 1,693,231 + -0.2 1,693,232 - +0.0 1,693,232 - +1.3 1,693,232 - -0.2 1,693,235 + +0.5 1,693,235 + -0.1 1,693,235 + -1.1 1,693,235 + -0.4 1,693,235 + -0.6 1,693,235 + +0.5 1,693,235 + -0.5 1,693,236 - -0.2 1,693,236 - +1.0 1,693,236 - +0.2 1,693,236 - +0.3 1,693,236 - +1.1 1,693,236 - +1.1 1,693,236 - -0.4 1,693,294 - -0.1 1,693,294 - +0.9 1,693,302 + +0.8 1,693,302 + +0.9 1,693,302 + -1.8 1,693,303 - +0.1 1,693,303 - -0.4 1,693,303 - -1.0 1,693,303 - +0.5 1,693,306 - +0.5 1,693,348 + +0.3 1,693,425 + +0.1 1,693,496 - +0.2 1,693,496 - +1.1 1,693,500 - -0.6 1,693,500 - -0.4 1,693,500 - +0.0 1,693,542 + +1.2 1,693,542 + +0.5 1,693,542 + +0.5 1,693,542 + -0.5 1,693,542 + +0.0 1,693,542 + -0.1 1,693,542 + +0.3 1,693,542 + +0.8 1,693,543 - -1.5 1,693,543 - -1.0 1,693,543 - -0.2 1,693,548 - +0.4 1,693,556 - +0.6 1,693,575 + -0.2 1,693,575 + -0.9 1,693,576 - +1.5 1,693,576 - +0.2 1,693,576 - -1.4 1,693,576 - -0.4 1,693,581 + +0.1 1,693,581 + +0.4 1,693,582 - -1.1 1,693,582 - -1.2 1,693,582 - -0.8 1,693,603 + -1.9 1,693,604 - -1.9 1,693,604 - +1.4 1,693,714 + Psyr_1507 0.31 +1.0 1,693,714 + Psyr_1507 0.31 +0.5 1,693,715 - Psyr_1507 0.32 -0.1 1,693,762 + Psyr_1507 0.42 +0.2 1,693,792 + Psyr_1507 0.49 +2.3 1,693,792 + Psyr_1507 0.49 -0.7 1,693,793 - Psyr_1507 0.49 +0.1 1,693,886 + Psyr_1507 0.70 +0.3 1,693,886 + Psyr_1507 0.70 -0.4 1,693,983 + +1.8 1,693,983 + +0.6 1,694,024 + -0.7 1,694,024 + +0.7 1,694,024 + +0.8 1,694,024 + -0.1 1,694,024 + -2.6 1,694,025 - -0.2 1,694,025 - +0.5 1,694,025 - +0.9 1,694,088 + +0.2 1,694,088 + +1.6 1,694,089 - +0.2 1,694,089 - +1.5 1,694,089 - +1.3 1,694,091 + -0.1 1,694,091 + -0.4 1,694,092 - -0.1 1,694,097 + -0.5 1,694,097 + -0.4 1,694,097 + +3.2 1,694,097 + +0.5 1,694,098 - -0.6 1,694,098 - +2.0 1,694,113 + -0.1 1,694,114 - -0.3 1,694,114 - +0.6 1,694,253 + Psyr_1508 0.14 +2.1 1,694,266 + Psyr_1508 0.15 +0.5 1,694,266 + Psyr_1508 0.15 -0.3 1,694,266 + Psyr_1508 0.15 +0.3 1,694,266 + Psyr_1508 0.15 +0.1 1,694,267 - Psyr_1508 0.15 +0.7 1,694,267 - Psyr_1508 0.15 +0.0 1,694,267 - Psyr_1508 0.15 +0.6 1,694,678 + Psyr_1508 0.58 +0.5 1,694,750 + Psyr_1508 0.66 +2.5 1,694,750 + Psyr_1508 0.66 +0.2 1,694,750 + Psyr_1508 0.66 +0.1 1,694,750 + Psyr_1508 0.66 +0.1 1,694,750 + Psyr_1508 0.66 -0.2 1,694,750 + Psyr_1508 0.66 +0.8 1,694,750 + Psyr_1508 0.66 +1.2 1,694,750 + Psyr_1508 0.66 -0.5 1,694,751 - Psyr_1508 0.66 +1.3 1,694,751 - Psyr_1508 0.66 +0.4 1,694,751 - Psyr_1508 0.66 +0.9 1,694,754 + Psyr_1508 0.66 +0.3 1,694,754 + Psyr_1508 0.66 -1.8 1,694,754 + Psyr_1508 0.66 +0.2 1,694,754 + Psyr_1508 0.66 +0.6 1,694,754 + Psyr_1508 0.66 +0.5 1,694,754 + Psyr_1508 0.66 +1.4 1,694,754 + Psyr_1508 0.66 +0.8 1,694,754 + Psyr_1508 0.66 -0.3 1,694,755 - Psyr_1508 0.66 -1.6 1,694,755 - Psyr_1508 0.66 -0.7 1,694,755 - Psyr_1508 0.66 +1.2 1,694,755 - Psyr_1508 0.66 -1.5 1,694,755 - Psyr_1508 0.66 +0.4 1,694,755 - Psyr_1508 0.66 +0.8 1,694,755 - Psyr_1508 0.66 +1.3 1,694,755 - Psyr_1508 0.66 -0.4 1,694,760 + Psyr_1508 0.67 +3.3 1,694,760 + Psyr_1508 0.67 -0.8 1,694,760 + Psyr_1508 0.67 +0.3 1,694,760 + Psyr_1508 0.67 +1.7 1,694,760 + Psyr_1508 0.67 -0.4 1,694,760 + Psyr_1508 0.67 +2.3 1,694,760 + Psyr_1508 0.67 +0.4 1,694,760 + Psyr_1508 0.67 -0.5 1,694,760 + Psyr_1508 0.67 -0.2 1,694,760 + Psyr_1508 0.67 +0.9 1,694,760 + Psyr_1508 0.67 +0.8 1,694,760 + Psyr_1508 0.67 +0.3 1,694,760 + Psyr_1508 0.67 +0.1 1,694,760 + Psyr_1508 0.67 +1.4 1,694,760 + Psyr_1508 0.67 +2.2 1,694,761 - Psyr_1508 0.67 -0.3 1,694,761 - Psyr_1508 0.67 -0.5 1,694,761 - Psyr_1508 0.67 +1.3 1,694,761 - Psyr_1508 0.67 +0.4 1,694,761 - Psyr_1508 0.67 +0.4 1,694,761 - Psyr_1508 0.67 +0.1 1,694,761 - Psyr_1508 0.67 +0.2 1,694,761 - Psyr_1508 0.67 -0.2 1,694,761 - Psyr_1508 0.67 +0.1 1,694,761 - Psyr_1508 0.67 +0.7 1,694,761 - Psyr_1508 0.67 +0.9 1,694,761 - Psyr_1508 0.67 +0.9 1,694,761 - Psyr_1508 0.67 +0.9 1,694,761 - Psyr_1508 0.67 -0.8 1,694,761 - Psyr_1508 0.67 -0.5 1,694,761 - Psyr_1508 0.67 -0.2 1,694,761 - Psyr_1508 0.67 -1.3 1,694,762 + Psyr_1508 0.67 +0.6 1,694,762 + Psyr_1508 0.67 +0.4 1,694,762 + Psyr_1508 0.67 -0.0 1,694,763 - Psyr_1508 0.67 +0.2 1,694,763 - Psyr_1508 0.67 +0.0 1,694,807 + Psyr_1508 0.71 -0.2 1,694,808 - Psyr_1508 0.72 -0.9 1,694,859 + Psyr_1508 0.77 -0.8 1,694,859 + Psyr_1508 0.77 +1.5 1,694,860 - Psyr_1508 0.77 -0.7 1,694,860 - Psyr_1508 0.77 +1.3 1,694,860 - Psyr_1508 0.77 -0.3 1,694,860 - Psyr_1508 0.77 -0.7 1,694,862 - Psyr_1508 0.77 +1.7 1,694,862 - Psyr_1508 0.77 +0.9 1,694,862 - Psyr_1508 0.77 -0.9 1,694,943 - Psyr_1508 0.86 -0.7 1,695,024 + -0.0 1,695,024 + +0.1 1,695,024 + -1.5 1,695,025 - -0.6 1,695,025 - -1.3 1,695,025 - +0.5 1,695,025 - +0.3 1,695,065 + -2.3 1,695,075 + +1.8 1,695,075 + -0.2 1,695,114 - +0.0 1,695,131 + -1.8 1,695,132 - +0.3 1,695,132 - -0.3 1,695,132 - -0.1 1,695,140 + +0.5 1,695,140 + -1.3 1,695,140 + +0.7 1,695,144 + +0.4 1,695,144 + -0.9 1,695,144 + -1.0 1,695,144 + +0.9 1,695,145 - +2.9 1,695,185 + -0.9 1,695,185 + +0.2 1,695,186 - -0.9 1,695,210 + -0.3 1,695,211 - -1.2 1,695,211 - +0.7 1,695,211 - +0.5 1,695,242 + -0.5 1,695,242 + -0.8 1,695,248 + +2.5 1,695,249 - +0.5 1,695,249 - -0.0 1,695,347 + +3.7 1,695,347 + -0.2 1,695,347 + -1.8 1,695,347 + +1.9 1,695,348 - -1.2 1,695,348 - -0.3 1,695,348 - -0.4 1,695,405 + +1.2 1,695,414 + +0.3 1,695,415 - -0.7 1,695,432 + +0.2 1,695,433 - +1.2 1,695,433 - +2.1 1,695,446 - -1.1 1,695,494 + -1.3 1,695,495 - +1.1 1,695,495 - +0.3 1,695,554 + -0.1 1,695,555 - -0.3 1,695,568 + -0.2 1,695,569 - +1.1 1,695,569 - -0.3 1,695,669 + -0.3 1,695,814 + Psyr_1509 0.40 +0.5 1,695,814 + Psyr_1509 0.40 -0.9 1,695,863 - Psyr_1509 0.51 -0.5 1,695,922 + Psyr_1509 0.64 +0.0 1,695,922 + Psyr_1509 0.64 -0.1 1,695,922 + Psyr_1509 0.64 -1.2 1,695,923 - Psyr_1509 0.64 +0.5 1,695,923 - Psyr_1509 0.64 -0.7 1,695,928 + Psyr_1509 0.66 -0.8 1,695,950 - Psyr_1509 0.71 -0.1 1,695,962 + Psyr_1509 0.73 +0.9 1,695,963 - Psyr_1509 0.73 -1.0 1,695,963 - Psyr_1509 0.73 +1.3 1,695,984 + Psyr_1509 0.78 +0.1 1,696,025 - Psyr_1509 0.88 +0.4 1,696,046 + -0.2 1,696,046 + +0.3 1,696,069 + -0.2
Or see this region's nucleotide sequence