Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0804

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0803 and Psyr_0804 overlap by 8 nucleotidesPsyr_0804 and Psyr_0805 overlap by 8 nucleotides Psyr_0803: Psyr_0803 - conserved hypothetical protein, at 908,947 to 910,080 _0803 Psyr_0804: Psyr_0804 - conserved hypothetical protein, at 910,073 to 910,831 _0804 Psyr_0805: Psyr_0805 - conserved hypothetical protein, at 910,824 to 911,918 _0805 Position (kb) 910 911Strain fitness (log2 ratio) -2 -1 0 1 2 3at 909.252 kb on - strand, within Psyr_0803at 909.252 kb on - strand, within Psyr_0803at 909.262 kb on + strand, within Psyr_0803at 909.262 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.564 kb on + strand, within Psyr_0803at 909.613 kb on + strand, within Psyr_0803at 909.613 kb on + strand, within Psyr_0803at 909.614 kb on - strand, within Psyr_0803at 909.614 kb on - strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.937 kb on + strand, within Psyr_0803at 909.937 kb on + strand, within Psyr_0803at 909.937 kb on + strand, within Psyr_0803at 909.938 kb on - strand, within Psyr_0803at 909.938 kb on - strand, within Psyr_0803at 909.938 kb on - strand, within Psyr_0803at 909.938 kb on - strand, within Psyr_0803at 909.938 kb on - strand, within Psyr_0803at 909.964 kb on + strand, within Psyr_0803at 909.964 kb on + strand, within Psyr_0803at 909.964 kb on + strand, within Psyr_0803at 909.965 kb on - strand, within Psyr_0803at 910.199 kb on + strand, within Psyr_0804at 910.199 kb on + strand, within Psyr_0804at 910.199 kb on + strand, within Psyr_0804at 910.200 kb on - strand, within Psyr_0804at 910.200 kb on - strand, within Psyr_0804at 910.286 kb on + strand, within Psyr_0804at 910.287 kb on - strand, within Psyr_0804at 910.287 kb on - strand, within Psyr_0804at 910.514 kb on + strand, within Psyr_0804at 910.514 kb on + strand, within Psyr_0804at 910.515 kb on - strand, within Psyr_0804at 910.515 kb on - strand, within Psyr_0804at 910.515 kb on - strand, within Psyr_0804at 910.563 kb on + strand, within Psyr_0804at 910.563 kb on + strand, within Psyr_0804at 910.564 kb on - strand, within Psyr_0804at 910.564 kb on - strand, within Psyr_0804at 910.564 kb on - strand, within Psyr_0804at 910.600 kb on + strand, within Psyr_0804at 910.601 kb on - strand, within Psyr_0804at 910.606 kb on + strand, within Psyr_0804at 910.606 kb on + strand, within Psyr_0804at 910.607 kb on - strand, within Psyr_0804at 910.607 kb on - strand, within Psyr_0804at 910.869 kb on + strandat 910.870 kb on - strandat 910.870 kb on - strandat 910.870 kb on - strandat 910.968 kb on + strand, within Psyr_0805at 910.968 kb on + strand, within Psyr_0805at 911.022 kb on + strand, within Psyr_0805at 911.022 kb on + strand, within Psyr_0805at 911.023 kb on - strand, within Psyr_0805at 911.023 kb on - strand, within Psyr_0805at 911.023 kb on - strand, within Psyr_0805at 911.023 kb on - strand, within Psyr_0805at 911.068 kb on + strand, within Psyr_0805at 911.068 kb on + strand, within Psyr_0805at 911.068 kb on + strand, within Psyr_0805at 911.068 kb on + strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.069 kb on - strand, within Psyr_0805at 911.240 kb on + strand, within Psyr_0805at 911.241 kb on - strand, within Psyr_0805at 911.495 kb on + strand, within Psyr_0805at 911.495 kb on + strand, within Psyr_0805at 911.535 kb on + strand, within Psyr_0805at 911.536 kb on - strand, within Psyr_0805at 911.536 kb on - strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.612 kb on + strand, within Psyr_0805at 911.613 kb on - strand, within Psyr_0805at 911.613 kb on - strand, within Psyr_0805at 911.613 kb on - strand, within Psyr_0805at 911.613 kb on - strand, within Psyr_0805at 911.711 kb on + strand, within Psyr_0805at 911.712 kb on - strand, within Psyr_0805at 911.712 kb on - strand, within Psyr_0805at 911.712 kb on - strand, within Psyr_0805at 911.712 kb on - strand, within Psyr_0805at 911.782 kb on + strand, within Psyr_0805at 911.782 kb on + strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805at 911.783 kb on - strand, within Psyr_0805

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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909,252 - Psyr_0803 0.27 -0.8
909,252 - Psyr_0803 0.27 +0.1
909,262 + Psyr_0803 0.28 -0.1
909,262 + Psyr_0803 0.28 -0.2
909,289 + Psyr_0803 0.30 -0.3
909,289 + Psyr_0803 0.30 +0.8
909,289 + Psyr_0803 0.30 +1.0
909,289 + Psyr_0803 0.30 +0.5
909,289 + Psyr_0803 0.30 -0.8
909,289 + Psyr_0803 0.30 -0.0
909,289 + Psyr_0803 0.30 +0.1
909,289 + Psyr_0803 0.30 -0.5
909,289 + Psyr_0803 0.30 -0.5
909,289 + Psyr_0803 0.30 +0.5
909,289 + Psyr_0803 0.30 -0.4
909,289 + Psyr_0803 0.30 -0.1
909,289 + Psyr_0803 0.30 +0.7
909,289 + Psyr_0803 0.30 +0.1
909,289 + Psyr_0803 0.30 +0.4
909,289 + Psyr_0803 0.30 -1.1
909,289 + Psyr_0803 0.30 -0.2
909,289 + Psyr_0803 0.30 +0.0
909,289 + Psyr_0803 0.30 +1.3
909,289 + Psyr_0803 0.30 +0.7
909,289 + Psyr_0803 0.30 +3.3
909,289 + Psyr_0803 0.30 -0.1
909,290 - Psyr_0803 0.30 +1.7
909,290 - Psyr_0803 0.30 -0.1
909,290 - Psyr_0803 0.30 -0.6
909,290 - Psyr_0803 0.30 -0.2
909,290 - Psyr_0803 0.30 +0.4
909,290 - Psyr_0803 0.30 -0.0
909,290 - Psyr_0803 0.30 -0.8
909,290 - Psyr_0803 0.30 -0.6
909,290 - Psyr_0803 0.30 +0.9
909,290 - Psyr_0803 0.30 -0.8
909,290 - Psyr_0803 0.30 -0.5
909,564 + Psyr_0803 0.54 +0.7
909,613 + Psyr_0803 0.59 -1.1
909,613 + Psyr_0803 0.59 -1.6
909,614 - Psyr_0803 0.59 -1.4
909,614 - Psyr_0803 0.59 +0.5
909,788 + Psyr_0803 0.74 -0.2
909,788 + Psyr_0803 0.74 +0.3
909,788 + Psyr_0803 0.74 -2.5
909,788 + Psyr_0803 0.74 +1.4
909,788 + Psyr_0803 0.74 -2.1
909,788 + Psyr_0803 0.74 -1.8
909,937 + Psyr_0803 0.87 -0.9
909,937 + Psyr_0803 0.87 -0.1
909,937 + Psyr_0803 0.87 +0.7
909,938 - Psyr_0803 0.87 -0.1
909,938 - Psyr_0803 0.87 +2.1
909,938 - Psyr_0803 0.87 +0.8
909,938 - Psyr_0803 0.87 +0.5
909,938 - Psyr_0803 0.87 +0.2
909,964 + Psyr_0803 0.90 +0.8
909,964 + Psyr_0803 0.90 -1.1
909,964 + Psyr_0803 0.90 +1.2
909,965 - Psyr_0803 0.90 -1.1
910,199 + Psyr_0804 0.17 -0.3
910,199 + Psyr_0804 0.17 -0.2
910,199 + Psyr_0804 0.17 +0.2
910,200 - Psyr_0804 0.17 -0.2
910,200 - Psyr_0804 0.17 -0.7
910,286 + Psyr_0804 0.28 +0.5
910,287 - Psyr_0804 0.28 -0.2
910,287 - Psyr_0804 0.28 -0.3
910,514 + Psyr_0804 0.58 -0.8
910,514 + Psyr_0804 0.58 +0.0
910,515 - Psyr_0804 0.58 +0.5
910,515 - Psyr_0804 0.58 +1.4
910,515 - Psyr_0804 0.58 +0.4
910,563 + Psyr_0804 0.65 +1.1
910,563 + Psyr_0804 0.65 +0.5
910,564 - Psyr_0804 0.65 +1.0
910,564 - Psyr_0804 0.65 -0.5
910,564 - Psyr_0804 0.65 +1.5
910,600 + Psyr_0804 0.69 +0.0
910,601 - Psyr_0804 0.70 -0.5
910,606 + Psyr_0804 0.70 +0.4
910,606 + Psyr_0804 0.70 +0.5
910,607 - Psyr_0804 0.70 -2.1
910,607 - Psyr_0804 0.70 +0.2
910,869 + -1.2
910,870 - +0.2
910,870 - -0.5
910,870 - +1.9
910,968 + Psyr_0805 0.13 +1.1
910,968 + Psyr_0805 0.13 +1.2
911,022 + Psyr_0805 0.18 +0.4
911,022 + Psyr_0805 0.18 -1.1
911,023 - Psyr_0805 0.18 -2.1
911,023 - Psyr_0805 0.18 +0.9
911,023 - Psyr_0805 0.18 +2.1
911,023 - Psyr_0805 0.18 -0.2
911,068 + Psyr_0805 0.22 -1.0
911,068 + Psyr_0805 0.22 -0.8
911,068 + Psyr_0805 0.22 +0.2
911,068 + Psyr_0805 0.22 +1.9
911,069 - Psyr_0805 0.22 -0.7
911,069 - Psyr_0805 0.22 -0.4
911,069 - Psyr_0805 0.22 +0.3
911,069 - Psyr_0805 0.22 -1.4
911,069 - Psyr_0805 0.22 +0.9
911,069 - Psyr_0805 0.22 -0.1
911,069 - Psyr_0805 0.22 +0.1
911,069 - Psyr_0805 0.22 -0.3
911,069 - Psyr_0805 0.22 -2.6
911,240 + Psyr_0805 0.38 +0.5
911,241 - Psyr_0805 0.38 -1.9
911,495 + Psyr_0805 0.61 -0.2
911,495 + Psyr_0805 0.61 -0.5
911,535 + Psyr_0805 0.65 -0.2
911,536 - Psyr_0805 0.65 -0.3
911,536 - Psyr_0805 0.65 -0.4
911,612 + Psyr_0805 0.72 -0.6
911,612 + Psyr_0805 0.72 +0.2
911,612 + Psyr_0805 0.72 -0.4
911,612 + Psyr_0805 0.72 -1.0
911,612 + Psyr_0805 0.72 -0.9
911,612 + Psyr_0805 0.72 -0.4
911,613 - Psyr_0805 0.72 -0.8
911,613 - Psyr_0805 0.72 -1.1
911,613 - Psyr_0805 0.72 -0.1
911,613 - Psyr_0805 0.72 -1.3
911,711 + Psyr_0805 0.81 -1.1
911,712 - Psyr_0805 0.81 +0.9
911,712 - Psyr_0805 0.81 -0.8
911,712 - Psyr_0805 0.81 -0.6
911,712 - Psyr_0805 0.81 -1.2
911,782 + Psyr_0805 0.87 +0.1
911,782 + Psyr_0805 0.87 +0.7
911,783 - Psyr_0805 0.88 -0.4
911,783 - Psyr_0805 0.88 -0.9
911,783 - Psyr_0805 0.88 +0.3
911,783 - Psyr_0805 0.88 -0.6
911,783 - Psyr_0805 0.88 +0.9
911,783 - Psyr_0805 0.88 -0.8

Or see this region's nucleotide sequence