Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0705

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0704 and Psyr_0705 are separated by 25 nucleotidesPsyr_0705 and Psyr_0706 are separated by 468 nucleotides Psyr_0704: Psyr_0704 - glutamate 5-kinase, at 806,935 to 808,053 _0704 Psyr_0705: Psyr_0705 - CreA, at 808,079 to 808,549 _0705 Psyr_0706: Psyr_0706 - Acyltransferase 3, at 809,018 to 810,079 _0706 Position (kb) 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 807.237 kb on + strand, within Psyr_0704at 807.237 kb on + strand, within Psyr_0704at 807.238 kb on - strand, within Psyr_0704at 807.512 kb on - strand, within Psyr_0704at 807.636 kb on + strand, within Psyr_0704at 807.636 kb on + strand, within Psyr_0704at 807.890 kb on + strand, within Psyr_0704at 807.891 kb on - strand, within Psyr_0704at 807.933 kb on + strand, within Psyr_0704at 807.933 kb on + strand, within Psyr_0704at 807.937 kb on + strand, within Psyr_0704at 807.937 kb on + strand, within Psyr_0704at 807.937 kb on + strand, within Psyr_0704at 807.937 kb on + strand, within Psyr_0704at 807.937 kb on + strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 807.938 kb on - strand, within Psyr_0704at 808.003 kb on + strandat 808.003 kb on + strandat 808.003 kb on + strandat 808.003 kb on + strandat 808.003 kb on + strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.004 kb on - strandat 808.005 kb on + strandat 808.006 kb on - strandat 808.006 kb on - strandat 808.099 kb on - strandat 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.387 kb on + strand, within Psyr_0705at 808.388 kb on - strand, within Psyr_0705at 808.454 kb on + strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.463 kb on + strand, within Psyr_0705at 808.464 kb on - strand, within Psyr_0705at 808.486 kb on + strand, within Psyr_0705at 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.655 kb on + strandat 808.675 kb on + strandat 808.753 kb on + strandat 808.753 kb on + strandat 808.819 kb on + strandat 808.820 kb on - strandat 808.864 kb on + strandat 808.864 kb on + strandat 808.877 kb on - strandat 808.918 kb on + strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.922 kb on - strandat 808.948 kb on - strandat 808.948 kb on - strandat 808.950 kb on + strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.954 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.040 kb on - strandat 809.061 kb on + strandat 809.061 kb on + strandat 809.062 kb on - strandat 809.062 kb on - strandat 809.080 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.118 kb on + strandat 809.118 kb on + strandat 809.118 kb on + strandat 809.119 kb on - strandat 809.119 kb on - strandat 809.155 kb on - strand, within Psyr_0706at 809.155 kb on - strand, within Psyr_0706at 809.184 kb on - strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.234 kb on - strand, within Psyr_0706at 809.234 kb on - strand, within Psyr_0706at 809.236 kb on - strand, within Psyr_0706at 809.310 kb on + strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.321 kb on + strand, within Psyr_0706at 809.339 kb on + strand, within Psyr_0706at 809.339 kb on + strand, within Psyr_0706at 809.340 kb on - strand, within Psyr_0706at 809.341 kb on + strand, within Psyr_0706at 809.341 kb on + strand, within Psyr_0706at 809.342 kb on - strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.414 kb on + strand, within Psyr_0706at 809.415 kb on - strand, within Psyr_0706at 809.415 kb on - strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.429 kb on - strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.463 kb on - strand, within Psyr_0706at 809.463 kb on - strand, within Psyr_0706at 809.511 kb on - strand, within Psyr_0706at 809.511 kb on - strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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807,237 + Psyr_0704 0.27 -1.4
807,237 + Psyr_0704 0.27 -0.2
807,238 - Psyr_0704 0.27 -0.1
807,512 - Psyr_0704 0.52 +2.4
807,636 + Psyr_0704 0.63 +1.1
807,636 + Psyr_0704 0.63 +1.7
807,890 + Psyr_0704 0.85 -2.3
807,891 - Psyr_0704 0.85 +1.0
807,933 + Psyr_0704 0.89 -0.0
807,933 + Psyr_0704 0.89 +0.6
807,937 + Psyr_0704 0.90 -0.6
807,937 + Psyr_0704 0.90 +0.1
807,937 + Psyr_0704 0.90 +0.3
807,937 + Psyr_0704 0.90 -0.6
807,937 + Psyr_0704 0.90 +0.5
807,938 - Psyr_0704 0.90 +0.8
807,938 - Psyr_0704 0.90 -0.9
807,938 - Psyr_0704 0.90 -0.0
807,938 - Psyr_0704 0.90 -0.2
807,938 - Psyr_0704 0.90 -0.1
807,938 - Psyr_0704 0.90 +1.3
807,938 - Psyr_0704 0.90 +0.0
807,938 - Psyr_0704 0.90 -0.5
807,938 - Psyr_0704 0.90 +0.4
807,938 - Psyr_0704 0.90 -0.9
807,938 - Psyr_0704 0.90 -1.0
807,938 - Psyr_0704 0.90 +0.1
807,938 - Psyr_0704 0.90 -0.5
807,938 - Psyr_0704 0.90 -0.2
807,938 - Psyr_0704 0.90 -0.4
807,938 - Psyr_0704 0.90 +0.7
807,938 - Psyr_0704 0.90 +0.0
808,003 + -1.0
808,003 + -0.1
808,003 + +0.8
808,003 + -0.2
808,003 + -2.2
808,004 - -1.4
808,004 - +0.6
808,004 - -0.3
808,004 - +0.1
808,004 - -0.2
808,004 - +1.3
808,004 - +0.0
808,004 - +0.5
808,004 - -0.9
808,004 - +2.0
808,005 + -0.4
808,006 - -0.5
808,006 - -1.1
808,099 - -2.1
808,241 + Psyr_0705 0.34 +2.5
808,241 + Psyr_0705 0.34 +1.3
808,241 + Psyr_0705 0.34 -1.0
808,241 + Psyr_0705 0.34 -0.2
808,242 - Psyr_0705 0.35 -0.9
808,242 - Psyr_0705 0.35 +0.8
808,242 - Psyr_0705 0.35 +1.0
808,387 + Psyr_0705 0.65 +0.2
808,388 - Psyr_0705 0.66 -1.0
808,454 + Psyr_0705 0.80 +0.1
808,455 - Psyr_0705 0.80 +0.8
808,455 - Psyr_0705 0.80 -1.3
808,455 - Psyr_0705 0.80 +0.7
808,455 - Psyr_0705 0.80 +1.3
808,455 - Psyr_0705 0.80 +1.0
808,455 - Psyr_0705 0.80 +0.8
808,455 - Psyr_0705 0.80 -1.8
808,463 + Psyr_0705 0.82 +0.3
808,464 - Psyr_0705 0.82 -0.2
808,486 + Psyr_0705 0.86 +1.6
808,637 + +3.1
808,637 + -0.6
808,637 + +0.7
808,637 + +3.6
808,637 + +1.2
808,638 - -1.7
808,638 - -1.3
808,638 - +0.8
808,638 - -1.1
808,638 - +0.0
808,655 + -1.4
808,675 + -1.8
808,753 + -1.6
808,753 + +0.3
808,819 + -1.4
808,820 - -0.8
808,864 + +0.3
808,864 + +0.2
808,877 - -0.3
808,918 + +0.6
808,919 - -0.8
808,919 - -1.6
808,922 - +0.1
808,948 - -1.2
808,948 - -0.6
808,950 + -1.3
808,951 - +0.8
808,951 - +0.6
808,951 - -1.3
808,951 - -0.2
808,954 + -1.0
809,039 + -1.4
809,039 + +0.4
809,040 - -0.3
809,061 + -2.1
809,061 + -1.2
809,062 - +0.0
809,062 - -2.4
809,080 + -0.8
809,116 + -1.4
809,116 + -0.4
809,116 + +0.4
809,116 + +0.3
809,116 + -3.3
809,117 - +2.3
809,117 - +0.2
809,117 - -2.0
809,117 - +0.8
809,117 - -0.1
809,117 - +1.6
809,118 + -0.4
809,118 + +0.9
809,118 + +1.4
809,119 - +0.6
809,119 - -1.6
809,155 - Psyr_0706 0.13 -0.6
809,155 - Psyr_0706 0.13 +1.4
809,184 - Psyr_0706 0.16 +0.4
809,233 + Psyr_0706 0.20 -0.4
809,233 + Psyr_0706 0.20 +0.3
809,233 + Psyr_0706 0.20 +1.6
809,233 + Psyr_0706 0.20 -0.9
809,233 + Psyr_0706 0.20 -0.9
809,233 + Psyr_0706 0.20 -0.2
809,233 + Psyr_0706 0.20 -0.5
809,234 - Psyr_0706 0.20 +0.4
809,234 - Psyr_0706 0.20 -0.1
809,236 - Psyr_0706 0.21 +0.8
809,310 + Psyr_0706 0.27 +2.6
809,311 - Psyr_0706 0.28 +1.1
809,311 - Psyr_0706 0.28 +0.1
809,311 - Psyr_0706 0.28 -1.0
809,311 - Psyr_0706 0.28 -0.5
809,321 + Psyr_0706 0.29 +0.9
809,339 + Psyr_0706 0.30 +1.2
809,339 + Psyr_0706 0.30 +0.8
809,340 - Psyr_0706 0.30 -0.1
809,341 + Psyr_0706 0.30 -0.8
809,341 + Psyr_0706 0.30 -0.9
809,342 - Psyr_0706 0.31 -0.6
809,399 + Psyr_0706 0.36 -0.5
809,399 + Psyr_0706 0.36 -0.2
809,399 + Psyr_0706 0.36 +0.3
809,400 - Psyr_0706 0.36 -1.0
809,400 - Psyr_0706 0.36 -1.0
809,400 - Psyr_0706 0.36 +0.2
809,400 - Psyr_0706 0.36 +0.8
809,400 - Psyr_0706 0.36 +0.9
809,400 - Psyr_0706 0.36 +0.5
809,400 - Psyr_0706 0.36 +0.4
809,400 - Psyr_0706 0.36 -0.2
809,414 + Psyr_0706 0.37 -0.2
809,415 - Psyr_0706 0.37 -1.8
809,415 - Psyr_0706 0.37 -1.4
809,421 + Psyr_0706 0.38 -1.1
809,421 + Psyr_0706 0.38 -0.6
809,421 + Psyr_0706 0.38 +0.7
809,421 + Psyr_0706 0.38 +1.1
809,422 - Psyr_0706 0.38 +0.9
809,422 - Psyr_0706 0.38 -0.7
809,422 - Psyr_0706 0.38 -1.1
809,422 - Psyr_0706 0.38 +0.7
809,422 - Psyr_0706 0.38 -0.1
809,422 - Psyr_0706 0.38 +0.2
809,428 + Psyr_0706 0.39 -0.4
809,428 + Psyr_0706 0.39 +0.4
809,428 + Psyr_0706 0.39 +0.3
809,429 - Psyr_0706 0.39 -0.4
809,462 + Psyr_0706 0.42 +0.5
809,462 + Psyr_0706 0.42 -0.7
809,462 + Psyr_0706 0.42 -0.1
809,463 - Psyr_0706 0.42 -0.2
809,463 - Psyr_0706 0.42 -0.5
809,511 - Psyr_0706 0.46 +1.4
809,511 - Psyr_0706 0.46 +0.3
809,513 + Psyr_0706 0.47 +0.4
809,513 + Psyr_0706 0.47 -0.0
809,513 + Psyr_0706 0.47 -0.9
809,514 - Psyr_0706 0.47 +0.8
809,514 - Psyr_0706 0.47 +1.8
809,514 - Psyr_0706 0.47 -0.2

Or see this region's nucleotide sequence