Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0655

Experiment: KB with Naringin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Naringin 250 ug/ml
743,217	+		Psyr_0654	0.73	-0.3
743,218	-		Psyr_0654	0.73	-0.3
743,218	-		Psyr_0654	0.73	+0.8
743,218	-		Psyr_0654	0.73	+1.1
743,218	-		Psyr_0654	0.73	+0.4
743,231	+		Psyr_0654	0.73	-0.0
743,231	+		Psyr_0654	0.73	+0.9
743,231	+		Psyr_0654	0.73	+1.3
743,232	-		Psyr_0654	0.73	-0.3
743,232	-		Psyr_0654	0.73	+1.6
743,266	-		Psyr_0654	0.75	+0.4
743,266	-		Psyr_0654	0.75	+0.1
743,295	+		Psyr_0654	0.76	+0.2
743,295	+		Psyr_0654	0.76	+1.6
743,295	+		Psyr_0654	0.76	-0.4
743,296	-		Psyr_0654	0.76	+0.2
743,296	-		Psyr_0654	0.76	-1.5
743,307	+		Psyr_0654	0.77	-1.2
743,360	-		Psyr_0654	0.79	+1.0
743,400	+		Psyr_0654	0.81	-2.2
743,615	-				+0.6
743,675	+				+1.9
743,675	+				+0.4
743,675	+				-0.4
743,675	+				-1.7
743,676	-				+0.9
743,676	-				-0.1
743,676	-				+0.3
743,676	-				+0.5
743,839	+				-0.1
743,889	+				+0.5
743,889	+				+0.3
743,890	-				-0.3
743,890	-				+0.5
743,890	-				-1.8
743,890	-				-0.4
743,913	+				-0.4
743,913	+				-1.1
743,913	+				-0.7
743,913	+				+0.0
743,913	+				+1.0
743,913	+				+1.7
743,913	+				+0.1
743,913	+				+0.5
743,913	+				+0.9
743,914	-				+0.3
743,914	-				-0.7
743,914	-				+0.3
743,943	+		Psyr_0655	0.15	+1.8
743,943	+		Psyr_0655	0.15	+0.4
743,944	-		Psyr_0655	0.15	+0.3
743,954	-		Psyr_0655	0.18	+1.3
744,093	+		Psyr_0655	0.55	+0.8
744,094	-		Psyr_0655	0.55	-0.5
744,094	-		Psyr_0655	0.55	+0.0
744,123	+		Psyr_0655	0.62	+0.8
744,123	+		Psyr_0655	0.62	+0.1
744,123	+		Psyr_0655	0.62	+1.2
744,123	+		Psyr_0655	0.62	+0.7
744,123	+		Psyr_0655	0.62	+0.8
744,124	-		Psyr_0655	0.63	+1.0
744,124	-		Psyr_0655	0.63	+1.0
744,124	-		Psyr_0655	0.63	+0.2
744,124	-		Psyr_0655	0.63	-1.3
744,124	-		Psyr_0655	0.63	+0.7
744,124	-		Psyr_0655	0.63	+0.7
744,124	-		Psyr_0655	0.63	-0.3
744,217	+		Psyr_0655	0.87	-0.2
744,273	-				-0.6
744,273	-				-2.1
744,283	+				-0.7
744,283	+				-0.3
744,283	+				-0.1
744,283	+				+2.0
744,283	+				-0.1
744,283	+				+1.0
744,284	-				+1.7
744,284	-				+1.0
744,284	-				+0.8
744,284	-				+1.6
744,301	+				-0.2
744,301	+				+0.2
744,301	+				+0.9
744,301	+				+0.3
744,301	+				+0.1
744,301	+				+0.6
744,301	+				+0.4
744,301	+				+0.7
744,301	+				+0.3
744,301	+				-0.1
744,301	+				+0.3
744,301	+				+0.4
744,301	+				-1.0
744,302	-				-0.1
744,302	-				+0.3
744,302	-				+0.1
744,302	-				+0.9
744,302	-				+1.1
744,302	-				-0.0
744,302	-				+0.8
744,302	-				+1.1
744,302	-				+0.1
744,302	-				+0.0
744,438	-				+0.9
744,438	-				+0.6
744,666	-				+0.7
744,687	+				+0.4
744,687	+				+0.2
744,688	-				+0.7
744,688	-				+3.7
744,732	-				-0.5
744,773	+				+0.7
744,773	+				+0.8
744,774	-				-0.0
744,832	+				+0.1
744,832	+				-0.2
744,832	+				+1.9
744,832	+				+1.2
744,832	+				-1.7
744,832	+				-0.8
744,832	+				-0.0
744,833	-				+0.1
744,833	-				-1.4
744,833	-				-0.2
744,833	-				+0.2
744,833	-				+0.2
744,862	+				-0.0
744,887	+		Psyr_0657	0.10	-0.1
744,887	+		Psyr_0657	0.10	-0.2
744,887	+		Psyr_0657	0.10	+0.9
744,887	+		Psyr_0657	0.10	+0.2
744,887	+		Psyr_0657	0.10	+1.2
744,887	+		Psyr_0657	0.10	-0.3
744,888	-		Psyr_0657	0.10	-0.5
744,888	-		Psyr_0657	0.10	+1.0
744,888	-		Psyr_0657	0.10	+0.5
744,888	-		Psyr_0657	0.10	+0.8
744,888	-		Psyr_0657	0.10	+0.5
744,888	-		Psyr_0657	0.10	+1.0
744,888	-		Psyr_0657	0.10	+0.5
744,888	-		Psyr_0657	0.10	+1.2
744,941	-		Psyr_0657	0.15	+1.2
744,941	-		Psyr_0657	0.15	+0.5
745,224	+		Psyr_0657	0.38	-0.3
745,225	-		Psyr_0657	0.38	+0.2
745,225	-		Psyr_0657	0.38	-0.2