Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0652 and Psyr_0653 are separated by 432 nucleotides Psyr_0653 and Psyr_0654 overlap by 4 nucleotides Psyr_0654 and Psyr_0655 are separated by 69 nucleotides Psyr_0655 and Psyr_0656 are separated by 164 nucleotides Psyr_0656 and Psyr_0657 are separated by 138 nucleotides
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Psyr_0653: Psyr_0653 - transcriptional regulator, MerR family, at 741,222 to 741,620
_0653
Psyr_0654: Psyr_0654 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 741,617 to 743,815
_0654
Psyr_0655: Psyr_0655 - conserved domain protein, at 743,885 to 744,265
_0655
Psyr_0656: Psyr_0656 - Heavy metal transport/detoxification protein, at 744,430 to 744,627
_0656
Psyr_0657: Psyr_0657 - Drug resistance transporter Bcr/CflA subfamily, at 744,766 to 745,962
_0657
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.852 kb on - strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.928 kb on - strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.968 kb on - strand at 740.968 kb on - strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.505 kb on + strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.563 kb on - strand, within Psyr_0653 at 741.563 kb on - strand, within Psyr_0653 at 741.565 kb on + strand, within Psyr_0653 at 741.566 kb on - strand, within Psyr_0653 at 741.729 kb on + strand at 741.729 kb on + strand at 741.765 kb on + strand at 741.766 kb on - strand at 741.766 kb on - strand at 741.766 kb on - strand at 741.766 kb on - strand at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.047 kb on - strand, within Psyr_0654 at 742.047 kb on - strand, within Psyr_0654 at 742.183 kb on + strand, within Psyr_0654 at 742.184 kb on - strand at 742.184 kb on - strand, within Psyr_0654 at 742.184 kb on - strand, within Psyr_0654 at 742.184 kb on - strand, within Psyr_0654 at 743.217 kb on + strand, within Psyr_0654 at 743.218 kb on - strand, within Psyr_0654 at 743.218 kb on - strand, within Psyr_0654 at 743.218 kb on - strand, within Psyr_0654 at 743.218 kb on - strand, within Psyr_0654 at 743.231 kb on + strand, within Psyr_0654 at 743.231 kb on + strand, within Psyr_0654 at 743.231 kb on + strand, within Psyr_0654 at 743.232 kb on - strand, within Psyr_0654 at 743.232 kb on - strand, within Psyr_0654 at 743.266 kb on - strand, within Psyr_0654 at 743.266 kb on - strand, within Psyr_0654 at 743.295 kb on + strand, within Psyr_0654 at 743.295 kb on + strand, within Psyr_0654 at 743.295 kb on + strand, within Psyr_0654 at 743.296 kb on - strand, within Psyr_0654 at 743.296 kb on - strand, within Psyr_0654 at 743.307 kb on + strand, within Psyr_0654 at 743.360 kb on - strand, within Psyr_0654 at 743.400 kb on + strand, within Psyr_0654 at 743.615 kb on - strand at 743.675 kb on + strand at 743.675 kb on + strand at 743.675 kb on + strand at 743.675 kb on + strand at 743.676 kb on - strand at 743.676 kb on - strand at 743.676 kb on - strand at 743.676 kb on - strand at 743.839 kb on + strand at 743.889 kb on + strand at 743.889 kb on + strand at 743.890 kb on - strand at 743.890 kb on - strand at 743.890 kb on - strand at 743.890 kb on - strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.913 kb on + strand at 743.914 kb on - strand at 743.914 kb on - strand at 743.914 kb on - strand at 743.943 kb on + strand, within Psyr_0655 at 743.943 kb on + strand, within Psyr_0655 at 743.944 kb on - strand, within Psyr_0655 at 743.954 kb on - strand, within Psyr_0655 at 744.093 kb on + strand, within Psyr_0655 at 744.094 kb on - strand, within Psyr_0655 at 744.094 kb on - strand, within Psyr_0655 at 744.123 kb on + strand, within Psyr_0655 at 744.123 kb on + strand, within Psyr_0655 at 744.123 kb on + strand, within Psyr_0655 at 744.123 kb on + strand, within Psyr_0655 at 744.123 kb on + strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.124 kb on - strand, within Psyr_0655 at 744.217 kb on + strand, within Psyr_0655 at 744.273 kb on - strand at 744.273 kb on - strand at 744.283 kb on + strand at 744.283 kb on + strand at 744.283 kb on + strand at 744.283 kb on + strand at 744.283 kb on + strand at 744.283 kb on + strand at 744.284 kb on - strand at 744.284 kb on - strand at 744.284 kb on - strand at 744.284 kb on - strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.301 kb on + strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.302 kb on - strand at 744.438 kb on - strand at 744.438 kb on - strand at 744.666 kb on - strand at 744.687 kb on + strand at 744.687 kb on + strand at 744.688 kb on - strand at 744.688 kb on - strand at 744.732 kb on - strand at 744.773 kb on + strand at 744.773 kb on + strand at 744.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 740,794 + +1.0 740,794 + -0.2 740,794 + +1.6 740,794 + +0.2 740,794 + +0.1 740,794 + +0.4 740,794 + -2.9 740,796 + +0.2 740,796 + -0.0 740,796 + -0.1 740,796 + -0.0 740,796 + +1.2 740,796 + +2.7 740,796 + -0.7 740,796 + +0.3 740,852 - +0.3 740,923 + +1.2 740,923 + -2.9 740,923 + -0.2 740,924 - -0.9 740,924 - +0.2 740,924 - +1.7 740,924 - -0.0 740,924 - -1.4 740,924 - +0.2 740,924 - -0.6 740,927 + -1.0 740,927 + +1.0 740,927 + -0.2 740,927 + -0.8 740,927 + -2.0 740,928 - +2.2 740,967 + +0.8 740,967 + +0.4 740,967 + +0.0 740,967 + -0.7 740,967 + +1.0 740,967 + -0.2 740,967 + +0.6 740,968 - -0.3 740,968 - -0.7 741,107 + -0.3 741,107 + -1.4 741,107 + +0.4 741,107 + -2.2 741,107 + -0.7 741,107 + -1.2 741,107 + +1.0 741,505 + Psyr_0653 0.71 +0.6 741,506 - Psyr_0653 0.71 -0.0 741,506 - Psyr_0653 0.71 +0.1 741,506 - Psyr_0653 0.71 -1.0 741,563 - Psyr_0653 0.85 -1.5 741,563 - Psyr_0653 0.85 -0.4 741,565 + Psyr_0653 0.86 +0.5 741,566 - Psyr_0653 0.86 -0.8 741,729 + +0.2 741,729 + -0.7 741,765 + -2.2 741,766 - -0.1 741,766 - +1.1 741,766 - -0.2 741,766 - +1.3 742,046 + Psyr_0654 0.20 +0.8 742,046 + Psyr_0654 0.20 -1.2 742,046 + Psyr_0654 0.20 -0.0 742,046 + Psyr_0654 0.20 -0.4 742,046 + Psyr_0654 0.20 -0.7 742,047 - Psyr_0654 0.20 -0.1 742,047 - Psyr_0654 0.20 +3.0 742,183 + Psyr_0654 0.26 +0.4 742,184 - -0.4 742,184 - Psyr_0654 0.26 -0.4 742,184 - Psyr_0654 0.26 -0.0 742,184 - Psyr_0654 0.26 -0.6 743,217 + Psyr_0654 0.73 -0.3 743,218 - Psyr_0654 0.73 -0.3 743,218 - Psyr_0654 0.73 +0.8 743,218 - Psyr_0654 0.73 +1.1 743,218 - Psyr_0654 0.73 +0.4 743,231 + Psyr_0654 0.73 -0.0 743,231 + Psyr_0654 0.73 +0.9 743,231 + Psyr_0654 0.73 +1.3 743,232 - Psyr_0654 0.73 -0.3 743,232 - Psyr_0654 0.73 +1.6 743,266 - Psyr_0654 0.75 +0.4 743,266 - Psyr_0654 0.75 +0.1 743,295 + Psyr_0654 0.76 +0.2 743,295 + Psyr_0654 0.76 +1.6 743,295 + Psyr_0654 0.76 -0.4 743,296 - Psyr_0654 0.76 +0.2 743,296 - Psyr_0654 0.76 -1.5 743,307 + Psyr_0654 0.77 -1.2 743,360 - Psyr_0654 0.79 +1.0 743,400 + Psyr_0654 0.81 -2.2 743,615 - +0.6 743,675 + +1.9 743,675 + +0.4 743,675 + -0.4 743,675 + -1.7 743,676 - +0.9 743,676 - -0.1 743,676 - +0.3 743,676 - +0.5 743,839 + -0.1 743,889 + +0.5 743,889 + +0.3 743,890 - -0.3 743,890 - +0.5 743,890 - -1.8 743,890 - -0.4 743,913 + -0.4 743,913 + -1.1 743,913 + -0.7 743,913 + +0.0 743,913 + +1.0 743,913 + +1.7 743,913 + +0.1 743,913 + +0.5 743,913 + +0.9 743,914 - +0.3 743,914 - -0.7 743,914 - +0.3 743,943 + Psyr_0655 0.15 +1.8 743,943 + Psyr_0655 0.15 +0.4 743,944 - Psyr_0655 0.15 +0.3 743,954 - Psyr_0655 0.18 +1.3 744,093 + Psyr_0655 0.55 +0.8 744,094 - Psyr_0655 0.55 -0.5 744,094 - Psyr_0655 0.55 +0.0 744,123 + Psyr_0655 0.62 +0.8 744,123 + Psyr_0655 0.62 +0.1 744,123 + Psyr_0655 0.62 +1.2 744,123 + Psyr_0655 0.62 +0.7 744,123 + Psyr_0655 0.62 +0.8 744,124 - Psyr_0655 0.63 +1.0 744,124 - Psyr_0655 0.63 +1.0 744,124 - Psyr_0655 0.63 +0.2 744,124 - Psyr_0655 0.63 -1.3 744,124 - Psyr_0655 0.63 +0.7 744,124 - Psyr_0655 0.63 +0.7 744,124 - Psyr_0655 0.63 -0.3 744,217 + Psyr_0655 0.87 -0.2 744,273 - -0.6 744,273 - -2.1 744,283 + -0.7 744,283 + -0.3 744,283 + -0.1 744,283 + +2.0 744,283 + -0.1 744,283 + +1.0 744,284 - +1.7 744,284 - +1.0 744,284 - +0.8 744,284 - +1.6 744,301 + -0.2 744,301 + +0.2 744,301 + +0.9 744,301 + +0.3 744,301 + +0.1 744,301 + +0.6 744,301 + +0.4 744,301 + +0.7 744,301 + +0.3 744,301 + -0.1 744,301 + +0.3 744,301 + +0.4 744,301 + -1.0 744,302 - -0.1 744,302 - +0.3 744,302 - +0.1 744,302 - +0.9 744,302 - +1.1 744,302 - -0.0 744,302 - +0.8 744,302 - +1.1 744,302 - +0.1 744,302 - +0.0 744,438 - +0.9 744,438 - +0.6 744,666 - +0.7 744,687 + +0.4 744,687 + +0.2 744,688 - +0.7 744,688 - +3.7 744,732 - -0.5 744,773 + +0.7 744,773 + +0.8 744,774 - -0.0
Or see this region's nucleotide sequence