Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0499 and Psyr_0500 overlap by 4 nucleotides Psyr_0500 and Psyr_0501 are separated by 58 nucleotides
Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498
_0499
Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228
_0500
Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691
_0501
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.569 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.570 kb on - strand, within Psyr_0499 at 541.848 kb on + strand, within Psyr_0499 at 541.849 kb on - strand, within Psyr_0499 at 541.865 kb on - strand, within Psyr_0499 at 541.917 kb on + strand, within Psyr_0499 at 541.917 kb on + strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 542.385 kb on + strand at 542.385 kb on + strand at 542.385 kb on + strand at 542.385 kb on + strand at 542.386 kb on - strand at 542.539 kb on + strand at 542.669 kb on + strand, within Psyr_0500 at 542.669 kb on + strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.854 kb on + strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 543.227 kb on + strand, within Psyr_0500 at 543.227 kb on + strand, within Psyr_0500 at 543.228 kb on - strand, within Psyr_0500 at 543.293 kb on + strand, within Psyr_0500 at 543.294 kb on - strand, within Psyr_0500 at 543.294 kb on - strand, within Psyr_0500 at 543.550 kb on + strand, within Psyr_0500 at 543.551 kb on - strand, within Psyr_0500 at 543.551 kb on - strand, within Psyr_0500 at 543.558 kb on + strand, within Psyr_0500 at 543.793 kb on + strand, within Psyr_0500 at 543.794 kb on - strand, within Psyr_0500 at 544.188 kb on - strand at 544.343 kb on + strand at 544.420 kb on + strand at 544.447 kb on + strand at 544.447 kb on + strand at 544.447 kb on + strand at 544.447 kb on + strand at 544.448 kb on - strand at 544.448 kb on - strand at 544.448 kb on - strand at 544.554 kb on + strand at 544.555 kb on - strand at 544.555 kb on - strand at 544.555 kb on - strand at 544.555 kb on - strand at 544.555 kb on - strand at 544.584 kb on - strand at 544.606 kb on + strand at 544.659 kb on + strand, within Psyr_0501 at 544.659 kb on + strand, within Psyr_0501 at 544.660 kb on - strand, within Psyr_0501 at 545.057 kb on - strand, within Psyr_0501 at 545.057 kb on - strand, within Psyr_0501 at 545.080 kb on + strand, within Psyr_0501 at 545.121 kb on + strand, within Psyr_0501 at 545.122 kb on - strand, within Psyr_0501
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 541,569 + Psyr_0499 0.42 +0.5 541,569 + Psyr_0499 0.42 +0.8 541,570 - Psyr_0499 0.42 -0.0 541,848 + Psyr_0499 0.59 +0.3 541,849 - Psyr_0499 0.60 +0.9 541,865 - Psyr_0499 0.60 +0.6 541,917 + Psyr_0499 0.64 -0.2 541,917 + Psyr_0499 0.64 +0.5 541,918 - Psyr_0499 0.64 +0.6 541,918 - Psyr_0499 0.64 +1.2 541,918 - Psyr_0499 0.64 -1.5 542,385 + +0.1 542,385 + -0.3 542,385 + -1.0 542,385 + +1.2 542,386 - +0.1 542,539 + -1.2 542,669 + Psyr_0500 0.10 -1.0 542,669 + Psyr_0500 0.10 -0.1 542,670 - Psyr_0500 0.10 -1.1 542,670 - Psyr_0500 0.10 +2.5 542,670 - Psyr_0500 0.10 +0.3 542,670 - Psyr_0500 0.10 +0.1 542,670 - Psyr_0500 0.10 +0.8 542,670 - Psyr_0500 0.10 +0.6 542,854 + Psyr_0500 0.21 -0.7 542,855 - Psyr_0500 0.21 +0.9 542,855 - Psyr_0500 0.21 -0.7 542,855 - Psyr_0500 0.21 +0.5 543,227 + Psyr_0500 0.42 +0.2 543,227 + Psyr_0500 0.42 -1.7 543,228 - Psyr_0500 0.42 -0.3 543,293 + Psyr_0500 0.46 +0.5 543,294 - Psyr_0500 0.46 +0.2 543,294 - Psyr_0500 0.46 -0.3 543,550 + Psyr_0500 0.61 -0.3 543,551 - Psyr_0500 0.61 +1.4 543,551 - Psyr_0500 0.61 +0.2 543,558 + Psyr_0500 0.61 +0.2 543,793 + Psyr_0500 0.75 +0.7 543,794 - Psyr_0500 0.75 +0.4 544,188 - -1.3 544,343 + -0.4 544,420 + -0.7 544,447 + +0.3 544,447 + -0.7 544,447 + -1.3 544,447 + -1.9 544,448 - +2.4 544,448 - +0.4 544,448 - -0.6 544,554 + +0.0 544,555 - +0.1 544,555 - +0.2 544,555 - +0.3 544,555 - -1.3 544,555 - -0.4 544,584 - -1.4 544,606 + +0.1 544,659 + Psyr_0501 0.11 -0.3 544,659 + Psyr_0501 0.11 -1.2 544,660 - Psyr_0501 0.11 +2.2 545,057 - Psyr_0501 0.23 -0.7 545,057 - Psyr_0501 0.23 +1.6 545,080 + Psyr_0501 0.23 +0.1 545,121 + Psyr_0501 0.24 +0.7 545,122 - Psyr_0501 0.25 -1.6
Or see this region's nucleotide sequence