Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0496 and Psyr_0497 are separated by 15 nucleotides Psyr_0497 and Psyr_0498 are separated by 2 nucleotides Psyr_0498 and Psyr_0499 are separated by 9 nucleotides
Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307
_0496
Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087
_0497
Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884
_0498
Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498
_0499
Position (kb) 540
541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.222 kb on + strand at 539.254 kb on + strand at 539.254 kb on + strand at 539.254 kb on + strand at 539.254 kb on + strand at 539.254 kb on + strand at 539.255 kb on - strand at 539.255 kb on - strand at 539.255 kb on - strand at 539.255 kb on - strand at 539.280 kb on + strand at 539.281 kb on - strand at 539.333 kb on + strand at 539.333 kb on + strand at 539.333 kb on + strand at 539.333 kb on + strand at 539.334 kb on - strand at 539.334 kb on - strand at 539.334 kb on - strand at 539.334 kb on - strand at 539.590 kb on + strand, within Psyr_0497 at 539.590 kb on + strand, within Psyr_0497 at 539.590 kb on + strand, within Psyr_0497 at 539.591 kb on - strand, within Psyr_0497 at 539.591 kb on - strand, within Psyr_0497 at 539.644 kb on + strand, within Psyr_0497 at 539.645 kb on - strand, within Psyr_0497 at 539.645 kb on - strand, within Psyr_0497 at 539.668 kb on + strand, within Psyr_0497 at 539.668 kb on + strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.834 kb on - strand, within Psyr_0497 at 539.834 kb on - strand, within Psyr_0497 at 540.228 kb on + strand, within Psyr_0498 at 540.228 kb on + strand, within Psyr_0498 at 540.229 kb on - strand, within Psyr_0498 at 540.528 kb on + strand, within Psyr_0498 at 540.528 kb on + strand, within Psyr_0498 at 540.870 kb on + strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.873 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.903 kb on + strand at 541.149 kb on + strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.233 kb on + strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.273 kb on - strand, within Psyr_0499 at 541.370 kb on + strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.374 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.570 kb on - strand, within Psyr_0499 at 541.848 kb on + strand, within Psyr_0499 at 541.849 kb on - strand, within Psyr_0499 at 541.865 kb on - strand, within Psyr_0499
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 539,161 + Psyr_0496 0.88 +0.1 539,161 + Psyr_0496 0.88 -1.1 539,161 + Psyr_0496 0.88 +0.6 539,161 + Psyr_0496 0.88 -0.1 539,161 + Psyr_0496 0.88 -1.5 539,161 + Psyr_0496 0.88 +0.6 539,162 - Psyr_0496 0.88 -0.1 539,162 - Psyr_0496 0.88 -1.7 539,162 - Psyr_0496 0.88 -0.9 539,162 - Psyr_0496 0.88 -0.5 539,162 - Psyr_0496 0.88 -0.2 539,162 - Psyr_0496 0.88 +0.4 539,162 - Psyr_0496 0.88 -0.4 539,222 + -1.6 539,254 + -0.1 539,254 + -0.2 539,254 + -1.4 539,254 + -0.2 539,254 + +0.7 539,255 - -0.1 539,255 - +2.3 539,255 - +0.1 539,255 - -0.3 539,280 + -0.1 539,281 - -0.5 539,333 + +0.6 539,333 + -0.3 539,333 + +1.0 539,333 + -0.2 539,334 - -2.1 539,334 - -0.1 539,334 - +0.8 539,334 - -0.2 539,590 + Psyr_0497 0.35 -0.7 539,590 + Psyr_0497 0.35 -0.1 539,590 + Psyr_0497 0.35 +0.0 539,591 - Psyr_0497 0.35 +0.3 539,591 - Psyr_0497 0.35 +0.2 539,644 + Psyr_0497 0.42 +1.2 539,645 - Psyr_0497 0.42 +0.2 539,645 - Psyr_0497 0.42 -0.1 539,668 + Psyr_0497 0.45 -0.1 539,668 + Psyr_0497 0.45 -0.4 539,669 - Psyr_0497 0.45 -2.6 539,669 - Psyr_0497 0.45 +1.8 539,834 - Psyr_0497 0.67 -1.9 539,834 - Psyr_0497 0.67 -1.6 540,228 + Psyr_0498 0.17 +0.4 540,228 + Psyr_0498 0.17 +1.0 540,229 - Psyr_0498 0.17 -0.9 540,528 + Psyr_0498 0.55 -1.2 540,528 + Psyr_0498 0.55 -1.8 540,870 + -0.1 540,870 + -0.5 540,870 + +2.9 540,870 + +0.3 540,871 - -0.5 540,871 - -0.7 540,871 - +1.0 540,871 - -1.4 540,871 - -0.9 540,871 - +0.6 540,871 - -0.4 540,871 - -1.0 540,871 - +1.3 540,871 - +0.9 540,873 + -0.5 540,880 + +1.5 540,880 + +0.7 540,880 + -0.6 540,880 + -0.2 540,880 + -1.3 540,880 + +1.8 540,880 + -0.3 540,880 + -0.3 540,880 + -0.7 540,880 + -0.3 540,881 - +1.1 540,881 - +0.2 540,881 - -0.3 540,881 - -1.1 540,881 - +0.0 540,881 - -0.2 540,881 - +0.8 540,881 - -0.1 540,881 - +0.8 540,882 + +0.6 540,882 + +0.0 540,882 + +0.2 540,883 - -0.8 540,883 - +0.2 540,903 + -1.7 541,149 + Psyr_0499 0.16 +0.3 541,150 - Psyr_0499 0.16 +1.0 541,150 - Psyr_0499 0.16 -0.6 541,150 - Psyr_0499 0.16 +0.7 541,150 - Psyr_0499 0.16 +1.0 541,150 - Psyr_0499 0.16 +0.3 541,233 + Psyr_0499 0.21 -0.4 541,234 - Psyr_0499 0.21 -2.2 541,234 - Psyr_0499 0.21 +1.3 541,234 - Psyr_0499 0.21 -0.7 541,273 - Psyr_0499 0.24 +0.9 541,370 + Psyr_0499 0.30 -0.4 541,371 - Psyr_0499 0.30 -0.2 541,371 - Psyr_0499 0.30 -0.4 541,371 - Psyr_0499 0.30 -0.9 541,371 - Psyr_0499 0.30 -0.8 541,374 + Psyr_0499 0.30 +0.3 541,569 + Psyr_0499 0.42 +0.5 541,569 + Psyr_0499 0.42 +0.8 541,570 - Psyr_0499 0.42 -0.0 541,848 + Psyr_0499 0.59 +0.3 541,849 - Psyr_0499 0.60 +0.9 541,865 - Psyr_0499 0.60 +0.6
Or see this region's nucleotide sequence