Experiment: KB with Naringin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0035 and Psyr_0036 are separated by 0 nucleotides Psyr_0036 and Psyr_0037 are separated by 165 nucleotides Psyr_0037 and Psyr_0038 are separated by 150 nucleotides Psyr_0038 and Psyr_0039 are separated by 137 nucleotides
Psyr_0035: Psyr_0035 - regulatory protein, LysR:LysR, substrate-binding protein, at 39,307 to 40,263
_0035
Psyr_0036: Psyr_0036 - protein of unknown function DUF883, at 40,264 to 40,590
_0036
Psyr_0037: Psyr_0037 - Protein of unknown function DUF1458, at 40,756 to 40,971
_0037
Psyr_0038: Psyr_0038 - Protein of unknown function DUF1161, at 41,122 to 41,346
_0038
Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485
_0039
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.270 kb on - strand at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 40.033 kb on + strand, within Psyr_0035 at 40.033 kb on + strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.355 kb on + strand, within Psyr_0036 at 40.356 kb on - strand, within Psyr_0036 at 40.356 kb on - strand, within Psyr_0036 at 40.406 kb on + strand, within Psyr_0036 at 40.406 kb on + strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.552 kb on - strand, within Psyr_0036 at 40.552 kb on - strand, within Psyr_0036 at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.722 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.934 kb on + strand, within Psyr_0037 at 40.934 kb on + strand, within Psyr_0037 at 40.935 kb on - strand, within Psyr_0037 at 40.969 kb on + strand at 40.969 kb on + strand at 40.970 kb on - strand at 40.970 kb on - strand at 41.006 kb on + strand at 41.016 kb on + strand at 41.017 kb on - strand at 41.017 kb on - strand at 41.030 kb on + strand at 41.030 kb on + strand at 41.144 kb on + strand at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.515 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml remove 39,270 - -0.3 39,602 + Psyr_0035 0.31 +1.0 39,602 + Psyr_0035 0.31 -1.2 39,602 + Psyr_0035 0.31 +0.5 39,602 + Psyr_0035 0.31 -0.1 39,602 + Psyr_0035 0.31 +1.3 39,602 + Psyr_0035 0.31 -0.9 39,602 + Psyr_0035 0.31 -0.7 39,602 + Psyr_0035 0.31 -1.2 39,602 + Psyr_0035 0.31 +0.3 39,602 + Psyr_0035 0.31 +1.2 39,602 + Psyr_0035 0.31 +0.6 39,602 + Psyr_0035 0.31 -0.6 39,602 + Psyr_0035 0.31 +0.1 39,602 + Psyr_0035 0.31 -0.5 39,602 + Psyr_0035 0.31 -0.9 39,602 + Psyr_0035 0.31 -0.1 39,602 + Psyr_0035 0.31 -0.8 39,602 + Psyr_0035 0.31 +0.9 39,602 + Psyr_0035 0.31 -0.0 39,602 + Psyr_0035 0.31 -0.7 39,602 + Psyr_0035 0.31 -0.1 39,602 + Psyr_0035 0.31 +0.5 39,603 - Psyr_0035 0.31 +1.0 39,603 - Psyr_0035 0.31 +0.0 39,603 - Psyr_0035 0.31 +1.0 39,603 - Psyr_0035 0.31 -0.5 39,603 - Psyr_0035 0.31 -0.6 39,603 - Psyr_0035 0.31 -2.6 39,603 - Psyr_0035 0.31 -0.7 39,603 - Psyr_0035 0.31 -1.8 39,603 - Psyr_0035 0.31 +0.6 39,603 - Psyr_0035 0.31 -0.0 39,792 - Psyr_0035 0.51 -0.6 39,792 - Psyr_0035 0.51 -0.2 39,792 - Psyr_0035 0.51 +1.0 40,033 + Psyr_0035 0.76 -0.4 40,033 + Psyr_0035 0.76 +2.6 40,034 - Psyr_0035 0.76 -1.4 40,034 - Psyr_0035 0.76 -2.5 40,034 - Psyr_0035 0.76 +1.0 40,034 - Psyr_0035 0.76 -0.1 40,037 - Psyr_0035 0.76 -0.2 40,037 - Psyr_0035 0.76 +0.4 40,037 - Psyr_0035 0.76 +0.1 40,037 - Psyr_0035 0.76 +0.7 40,037 - Psyr_0035 0.76 -0.7 40,289 + +0.6 40,289 + -1.6 40,289 + +0.7 40,289 + +0.6 40,289 + +0.3 40,289 + -0.5 40,289 + +0.6 40,289 + +2.5 40,289 + +0.8 40,289 + -1.0 40,290 - -0.2 40,290 - -0.2 40,290 - +0.6 40,290 - +0.1 40,290 - +1.0 40,290 - +1.4 40,290 - -0.3 40,290 - -0.4 40,355 + Psyr_0036 0.28 +0.7 40,356 - Psyr_0036 0.28 +0.2 40,356 - Psyr_0036 0.28 +0.1 40,406 + Psyr_0036 0.43 +0.7 40,406 + Psyr_0036 0.43 +0.9 40,407 - Psyr_0036 0.44 +0.8 40,407 - Psyr_0036 0.44 +1.0 40,407 - Psyr_0036 0.44 -0.8 40,407 - Psyr_0036 0.44 -0.3 40,407 - Psyr_0036 0.44 +0.4 40,552 - Psyr_0036 0.88 +1.0 40,552 - Psyr_0036 0.88 -0.3 40,581 + -1.1 40,581 + +0.5 40,581 + -0.0 40,581 + +1.0 40,581 + -0.4 40,581 + -1.2 40,581 + -0.1 40,581 + +1.7 40,582 - +0.3 40,582 - +0.5 40,582 - -3.4 40,582 - +0.5 40,582 - -0.1 40,582 - -0.5 40,582 - -1.2 40,582 - +0.1 40,582 - +1.6 40,584 + +0.2 40,584 + -2.3 40,720 + +0.0 40,720 + -0.5 40,720 + +1.3 40,720 + -0.3 40,721 - -0.3 40,721 - +1.0 40,721 - -0.2 40,721 - -0.2 40,722 + +0.0 40,774 + -0.1 40,774 + +1.8 40,774 + +0.4 40,774 + -0.3 40,774 + -1.3 40,774 + +1.0 40,774 + -0.0 40,775 - +0.3 40,775 - -0.3 40,775 - -0.6 40,934 + Psyr_0037 0.82 +0.2 40,934 + Psyr_0037 0.82 -0.9 40,935 - Psyr_0037 0.83 +0.1 40,969 + -0.4 40,969 + +0.5 40,970 - -1.0 40,970 - +1.6 41,006 + +0.6 41,016 + +0.2 41,017 - -0.9 41,017 - -0.2 41,030 + -0.8 41,030 + +0.3 41,144 + -0.0 41,248 + Psyr_0038 0.56 -0.2 41,248 + Psyr_0038 0.56 +2.3 41,248 + Psyr_0038 0.56 -0.3 41,248 + Psyr_0038 0.56 +0.3 41,248 + Psyr_0038 0.56 -0.0 41,248 + Psyr_0038 0.56 +0.1 41,249 - Psyr_0038 0.56 -0.7 41,249 - Psyr_0038 0.56 +0.7 41,515 + +0.2 41,542 + +0.3 41,542 + -0.9 41,542 + +0.1 41,542 + +0.7 41,542 + +0.7 41,542 + +2.2 41,542 + +0.7 41,542 + +0.1 41,542 + -0.3 41,543 - -0.4 41,543 - +1.0 41,543 - -0.8 41,543 - +2.3 41,543 - -0.0 41,543 - -1.0 41,543 - -0.9 41,543 - -1.4 41,543 - +0.3 41,543 - -0.1 41,543 - +0.2 41,543 - -0.6 41,543 - +1.4 41,543 - +1.1 41,543 - +0.7 41,555 + -0.4
Or see this region's nucleotide sequence