Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06290

Experiment: malate (C) and Ammonium chloride (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06280 and PFLU_RS06285 are separated by 211 nucleotidesPFLU_RS06285 and PFLU_RS06290 overlap by 4 nucleotidesPFLU_RS06290 and PFLU_RS06295 are separated by 17 nucleotidesPFLU_RS06295 and PFLU_RS06300 are separated by 0 nucleotides PFLU_RS06280: PFLU_RS06280 - elongation factor Ts, at 1,407,078 to 1,407,941 _RS06280 PFLU_RS06285: PFLU_RS06285 - UMP kinase, at 1,408,153 to 1,408,896 _RS06285 PFLU_RS06290: PFLU_RS06290 - ribosome recycling factor, at 1,408,893 to 1,409,450 _RS06290 PFLU_RS06295: PFLU_RS06295 - di-trans,poly-cis-decaprenylcistransferase, at 1,409,468 to 1,410,223 _RS06295 PFLU_RS06300: PFLU_RS06300 - phosphatidate cytidylyltransferase, at 1,410,224 to 1,411,030 _RS06300 Position (kb) 1408 1409 1410Strain fitness (log2 ratio) -2 -1 0 1at 1407.939 kb on + strandat 1407.939 kb on + strandat 1407.939 kb on + strandat 1407.939 kb on + strandat 1408.018 kb on + strandat 1408.018 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.044 kb on + strandat 1408.084 kb on + strandat 1408.084 kb on + strandat 1408.102 kb on + strandat 1408.102 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.446 kb on + strandat 1409.448 kb on + strandat 1410.184 kb on + strandat 1410.221 kb on + strandat 1410.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with MOPS
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1,407,939 + +0.4
1,407,939 + +0.5
1,407,939 + +0.0
1,407,939 + -0.6
1,408,018 + +0.4
1,408,018 + -0.3
1,408,044 + +0.8
1,408,044 + -0.3
1,408,044 + -1.4
1,408,044 + +0.4
1,408,044 + -0.7
1,408,044 + -0.0
1,408,044 + -0.2
1,408,084 + -2.0
1,408,084 + -1.1
1,408,102 + -0.3
1,408,102 + -2.2
1,409,446 + -0.7
1,409,446 + +0.4
1,409,446 + -0.1
1,409,446 + -0.2
1,409,446 + -0.8
1,409,446 + -0.6
1,409,446 + -0.5
1,409,446 + -0.9
1,409,446 + -1.3
1,409,446 + +0.7
1,409,446 + -1.7
1,409,446 + -1.5
1,409,446 + -0.3
1,409,446 + -1.2
1,409,446 + -1.9
1,409,446 + +0.1
1,409,448 + +0.6
1,410,184 + +0.2
1,410,221 + -2.3
1,410,221 + -1.5

Or see this region's nucleotide sequence