Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4094

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
5,347,881	+		BT4093	0.56	-0.3
5,347,917	-		BT4093	0.58	-2.5
5,347,923	-		BT4093	0.58	-0.0
5,347,959	-		BT4093	0.60	-0.4
5,348,017	-		BT4093	0.63	-2.5
5,348,017	-		BT4093	0.63	-1.5
5,348,018	+		BT4093	0.63	-2.7
5,348,019	-		BT4093	0.63	-0.7
5,348,178	-		BT4093	0.70	+0.4
5,348,225	+		BT4093	0.72	-1.7
5,348,229	+		BT4093	0.73	-0.3
5,348,257	-		BT4093	0.74	-0.6
5,348,281	+		BT4093	0.75	-1.1
5,348,327	+		BT4093	0.77	-1.0
5,348,347	-		BT4093	0.78	+0.3
5,348,392	+		BT4093	0.80	+0.2
5,348,392	+		BT4093	0.80	-2.3
5,348,401	+		BT4093	0.81	-0.4
5,348,405	+		BT4093	0.81	-0.2
5,348,406	-		BT4093	0.81	-2.0
5,348,406	-		BT4093	0.81	+0.4
5,348,425	-		BT4093	0.82	-1.5
5,348,466	+		BT4093	0.84	-2.7
5,348,479	+		BT4093	0.84	-2.0
5,348,589	-		BT4093	0.89	+3.1
5,348,634	-				-2.4
5,348,668	-				-2.6
5,348,668	-				-1.3
5,348,668	-				-1.7
5,348,687	-				-1.1
5,348,687	-				-1.1
5,348,709	-				-1.4
5,348,744	+				-1.2
5,348,745	-				+0.4
5,348,759	+				-0.1
5,348,759	+				-0.7
5,348,821	+				+0.8
5,348,868	+				-0.1
5,348,899	-				-2.1
5,349,005	-		BT4094	0.14	-2.7
5,349,165	-		BT4094	0.28	+1.9
5,349,219	-		BT4094	0.33	-1.4
5,349,303	-		BT4094	0.40	+0.8
5,349,306	+		BT4094	0.41	-0.7
5,349,306	+		BT4094	0.41	+1.0
5,349,307	-		BT4094	0.41	-0.8
5,349,410	+		BT4094	0.50	-0.6
5,349,411	-		BT4094	0.50	-0.7
5,349,411	-		BT4094	0.50	-0.9
5,349,540	+		BT4094	0.61	+3.3
5,349,544	+		BT4094	0.62	+0.4
5,349,562	+		BT4094	0.63	-2.5
5,349,601	-		BT4094	0.67	-1.7
5,349,626	-		BT4094	0.69	-2.5
5,349,668	-		BT4094	0.72	-1.1
5,349,682	+		BT4094	0.74	+0.5
5,349,687	+		BT4094	0.74	-1.8
5,349,697	+		BT4094	0.75	-0.1
5,349,697	+		BT4094	0.75	-1.7
5,349,710	-		BT4094	0.76	+0.7
5,349,737	+		BT4094	0.79	-1.7
5,349,739	+		BT4094	0.79	+2.7
5,349,753	-		BT4094	0.80	+1.3
5,349,825	-		BT4094	0.86	-0.5
5,349,876	+				+2.6
5,349,880	+				-0.4
5,349,881	-				+2.8
5,349,881	-				-2.1
5,349,881	-				+0.9
5,349,891	+				+2.2
5,349,902	-				-2.1
5,349,915	-				+1.1
5,349,918	+				-0.8
5,349,918	+				+0.3
5,349,919	-				-0.1
5,349,920	+				+0.4
5,349,924	-				-1.1
5,350,056	-				+1.9
5,350,121	+				-0.2
5,350,122	-				-2.2
5,350,125	-				-0.6
5,350,269	+		BT4095	0.18	-1.0
5,350,292	+		BT4095	0.20	-0.8
5,350,295	+		BT4095	0.20	-0.9
5,350,296	-		BT4095	0.20	+0.7
5,350,297	+		BT4095	0.20	-0.2
5,350,298	-		BT4095	0.20	-1.1
5,350,329	-		BT4095	0.22	-0.3
5,350,331	-		BT4095	0.22	-1.3
5,350,389	+		BT4095	0.26	+0.3
5,350,420	+		BT4095	0.28	+0.9
5,350,421	-		BT4095	0.28	-2.2
5,350,433	-		BT4095	0.29	-1.7
5,350,446	-		BT4095	0.30	+0.2
5,350,446	-		BT4095	0.30	+0.1
5,350,446	-		BT4095	0.30	+0.1
5,350,501	+		BT4095	0.33	-1.3
5,350,544	-		BT4095	0.36	-0.1
5,350,573	+		BT4095	0.38	+1.0
5,350,587	-		BT4095	0.39	-0.8
5,350,614	-		BT4095	0.41	-0.3
5,350,615	+		BT4095	0.41	-0.1
5,350,616	-		BT4095	0.41	-0.9
5,350,621	-		BT4095	0.41	+0.8
5,350,621	-		BT4095	0.41	-2.4
5,350,652	-		BT4095	0.43	+2.8
5,350,672	-		BT4095	0.45	+0.9
5,350,672	-		BT4095	0.45	-2.7
5,350,750	+		BT4095	0.50	-0.3
5,350,751	-		BT4095	0.50	-0.2
5,350,751	-		BT4095	0.50	-1.2
5,350,751	-		BT4095	0.50	+0.4
5,350,768	+		BT4095	0.51	-0.0
5,350,795	+		BT4095	0.53	-0.2
5,350,796	-		BT4095	0.53	+0.8
5,350,796	-		BT4095	0.53	-0.0
5,350,796	-		BT4095	0.53	+0.7
5,350,796	-		BT4095	0.53	-0.2
5,350,803	-		BT4095	0.53	-2.2
5,350,805	-		BT4095	0.53	+1.3
5,350,920	+		BT4095	0.61	-1.5
5,350,933	+		BT4095	0.62	-2.1