Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3618

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
4,686,615	+		BT3617	0.31	-0.8
4,686,633	-		BT3617	0.33	-4.1
4,686,659	-		BT3617	0.35	-2.5
4,686,697	-		BT3617	0.39	-2.1
4,686,699	+		BT3617	0.39	+1.3
4,686,700	-		BT3617	0.40	-0.4
4,686,700	-		BT3617	0.40	-1.0
4,686,700	-		BT3617	0.40	-0.4
4,686,830	+		BT3617	0.52	-0.9
4,686,831	-		BT3617	0.52	-1.2
4,686,891	-		BT3617	0.58	-0.5
4,687,021	+		BT3617	0.71	-0.2
4,687,021	+		BT3617	0.71	-1.0
4,687,022	-		BT3617	0.71	+0.5
4,687,025	+		BT3617	0.71	+1.6
4,687,028	-		BT3617	0.72	-1.7
4,687,068	+		BT3617	0.76	-0.1
4,687,183	+		BT3617	0.87	+0.2
4,687,352	+				+0.6
4,687,353	-				+1.2
4,687,353	-				-0.0
4,687,410	+				+0.2
4,687,575	+				+0.2
4,687,630	+				+0.7
4,687,631	-				-0.7
4,687,631	-				-2.2
4,687,681	-				-2.5
4,687,681	-				-2.7
4,687,736	+		BT3618	0.14	-2.7
4,687,775	+		BT3618	0.19	-1.3
4,687,810	+		BT3618	0.23	+0.5
4,687,811	-		BT3618	0.23	-2.1
4,687,812	+		BT3618	0.23	-1.7
4,688,056	-		BT3618	0.52	-0.2
4,688,196	+		BT3618	0.68	-1.7
4,688,196	+		BT3618	0.68	-1.5
4,688,197	-		BT3618	0.68	-2.9
4,688,197	-		BT3618	0.68	-2.0
4,688,262	+		BT3618	0.76	-0.6
4,688,262	+		BT3618	0.76	-2.6
4,688,263	-		BT3618	0.76	-0.7
4,688,401	-				-0.3
4,688,462	-				-0.8
4,688,472	-				+2.4
4,688,477	-				-1.0
4,688,477	-				-2.2
4,688,500	+				+0.2
4,688,500	+				-0.5
4,688,500	+				-1.1
4,688,595	-		BT3619	0.12	-0.2
4,688,604	+		BT3619	0.13	-2.2
4,688,605	-		BT3619	0.13	-1.2
4,688,626	+		BT3619	0.15	+0.9
4,688,626	+		BT3619	0.15	+0.9
4,688,627	-		BT3619	0.15	-1.1
4,688,627	-		BT3619	0.15	-0.6
4,688,633	+		BT3619	0.15	-1.2
4,688,663	+		BT3619	0.18	+0.3
4,688,664	-		BT3619	0.18	-1.0
4,688,673	+		BT3619	0.19	+1.6
4,688,681	+		BT3619	0.19	-2.7
4,688,682	-		BT3619	0.20	-1.8
4,688,694	+		BT3619	0.21	-1.4
4,688,694	+		BT3619	0.21	+0.4
4,688,738	+		BT3619	0.25	-1.5
4,688,739	-		BT3619	0.25	+0.0
4,688,817	+		BT3619	0.32	-1.0
4,688,817	+		BT3619	0.32	-2.0
4,688,817	+		BT3619	0.32	+2.1
4,688,817	+		BT3619	0.32	-0.3
4,688,817	+		BT3619	0.32	+1.9
4,688,842	+		BT3619	0.34	+0.4
4,688,850	+		BT3619	0.35	-2.0
4,688,876	+		BT3619	0.37	-3.1
4,688,876	+		BT3619	0.37	-0.6
4,688,876	+		BT3619	0.37	-0.8
4,688,876	+		BT3619	0.37	-3.8
4,688,877	-		BT3619	0.37	+1.4
4,688,880	+		BT3619	0.37	-3.1
4,688,880	+		BT3619	0.37	+1.0
4,688,881	-		BT3619	0.37	-0.3
4,688,955	+		BT3619	0.44	+0.0
4,688,978	+		BT3619	0.46	-2.2
4,688,981	+		BT3619	0.46	-1.6
4,688,982	-		BT3619	0.46	+0.4
4,688,984	+		BT3619	0.47	-0.6
4,688,985	-		BT3619	0.47	-1.6
4,688,985	-		BT3619	0.47	-1.9
4,689,007	-		BT3619	0.49	+0.3
4,689,019	+		BT3619	0.50	-0.4
4,689,019	+		BT3619	0.50	+2.4
4,689,020	-		BT3619	0.50	-0.4
4,689,023	+		BT3619	0.50	-2.2
4,689,024	-		BT3619	0.50	-1.0
4,689,024	-		BT3619	0.50	-2.0
4,689,065	+		BT3619	0.54	-2.3
4,689,085	+		BT3619	0.56	+2.1
4,689,086	-		BT3619	0.56	-2.0
4,689,086	-		BT3619	0.56	-1.1
4,689,116	-		BT3619	0.58	-1.5
4,689,129	+		BT3619	0.60	-1.9
4,689,130	-		BT3619	0.60	-0.3
4,689,143	-		BT3619	0.61	-2.1
4,689,151	+		BT3619	0.61	+1.7
4,689,151	+		BT3619	0.61	-2.2
4,689,151	+		BT3619	0.61	+0.0
4,689,156	-		BT3619	0.62	+0.0
4,689,185	+		BT3619	0.65	+0.4
4,689,382	+		BT3619	0.82	+0.9
4,689,383	-		BT3619	0.82	-0.7
4,689,383	-		BT3619	0.82	+0.2
4,689,431	+		BT3619	0.87	-2.1
4,689,439	-		BT3619	0.87	-0.7
4,689,439	-		BT3619	0.87	-0.7