Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2962

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
3,730,294	-				-0.0
3,730,302	+				-0.1
3,730,303	-				-1.9
3,730,303	-				+0.5
3,730,318	-				-2.1
3,730,320	-				-1.7
3,730,367	-				+0.7
3,730,396	+				-1.9
3,730,416	-				-0.8
3,730,466	-		BT2961	0.12	-1.3
3,730,471	+		BT2961	0.12	-1.5
3,730,472	-		BT2961	0.12	-2.2
3,730,524	+		BT2961	0.19	-1.7
3,730,534	-		BT2961	0.20	-0.5
3,730,544	+		BT2961	0.21	-0.4
3,730,545	-		BT2961	0.21	-0.1
3,730,559	+		BT2961	0.23	+0.5
3,730,573	+		BT2961	0.24	+1.3
3,730,573	+		BT2961	0.24	-1.7
3,730,573	+		BT2961	0.24	-1.6
3,730,573	+		BT2961	0.24	-1.0
3,730,582	-		BT2961	0.25	+0.5
3,730,582	-		BT2961	0.25	-1.1
3,730,582	-		BT2961	0.25	-0.2
3,730,582	-		BT2961	0.25	-1.6
3,730,582	-		BT2961	0.25	-1.8
3,730,583	+		BT2961	0.25	+0.3
3,730,583	+		BT2961	0.25	-0.4
3,730,584	-		BT2961	0.26	-1.3
3,730,727	+		BT2961	0.42	+0.1
3,730,736	+		BT2961	0.43	-3.3
3,730,738	+		BT2961	0.43	+1.3
3,730,738	+		BT2961	0.43	-0.8
3,730,738	+		BT2961	0.43	-1.8
3,730,739	-		BT2961	0.44	+0.4
3,730,739	-		BT2961	0.44	-2.7
3,730,856	+		BT2961	0.57	-1.1
3,730,859	+		BT2961	0.58	-0.6
3,730,860	-		BT2961	0.58	-2.1
3,730,864	+		BT2961	0.58	-1.4
3,731,028	+		BT2961	0.77	-1.2
3,731,028	+		BT2961	0.77	-0.5
3,731,028	+		BT2961	0.77	-1.6
3,731,030	+		BT2961	0.78	-0.6
3,731,031	-		BT2961	0.78	-1.5
3,731,031	-		BT2961	0.78	-1.4
3,731,031	-		BT2961	0.78	-0.1
3,731,034	-		BT2961	0.78	-0.5
3,731,074	+		BT2961	0.83	-0.1
3,731,075	-		BT2961	0.83	+0.1
3,731,108	+		BT2961	0.87	-0.0
3,731,109	-		BT2961	0.87	-1.0
3,731,114	+		BT2961	0.87	-0.8
3,731,164	+				-2.6
3,731,199	+				-1.6
3,731,233	+				+0.0
3,731,248	-				-1.0
3,731,302	+		BT2962	0.34	-1.8
3,731,331	+		BT2962	0.47	-0.5
3,731,331	+		BT2962	0.47	-0.8
3,731,334	+		BT2962	0.48	-2.0
3,731,335	-		BT2962	0.49	-0.7
3,731,382	+		BT2962	0.70	-3.6
3,731,383	-		BT2962	0.70	-1.3
3,731,384	+		BT2962	0.71	-2.6
3,731,385	-		BT2962	0.71	-4.3
3,731,385	-		BT2962	0.71	-0.5
3,731,407	-		BT2962	0.81	-0.5
3,731,407	-		BT2962	0.81	+0.9
3,731,426	+				-0.5
3,731,427	-				-2.3
3,731,427	-				+0.6
3,731,428	+				+1.3
3,731,429	-				-1.0
3,731,429	-				-1.5
3,731,448	+				-1.7
3,731,448	+				+0.3
3,731,449	-				+0.9
3,731,451	-				+0.9
3,731,457	+				-1.7
3,731,471	-				-1.5
3,731,471	-				-0.1
3,731,472	+				+2.4
3,731,516	+				-0.1
3,731,517	-				-1.3
3,731,559	+				-0.5
3,731,560	-				-0.3
3,731,560	-				-1.8
3,731,561	+				+0.9
3,731,623	-				-2.2
3,731,626	+				-0.5
3,731,627	-				-0.9
3,731,755	-				-1.5
3,731,833	-		BT2963	0.12	-0.5
3,731,835	-		BT2963	0.12	+0.3
3,731,878	+		BT2963	0.13	-1.0
3,731,959	+		BT2963	0.16	-1.3
3,731,959	+		BT2963	0.16	-0.4
3,731,959	+		BT2963	0.16	-0.8
3,732,063	-		BT2963	0.20	-2.6
3,732,182	+		BT2963	0.24	+0.1
3,732,215	-		BT2963	0.25	+1.9
3,732,354	-		BT2963	0.29	-1.7
3,732,364	-		BT2963	0.30	-1.5
3,732,401	+		BT2963	0.31	+0.7
3,732,431	-		BT2963	0.32	-0.1
3,732,431	-		BT2963	0.32	-2.3