Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2410

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
3,010,424	+				-1.5
3,010,425	-				-0.1
3,010,426	+				-0.3
3,010,426	+				-1.1
3,010,426	+				-0.5
3,010,570	+				-0.5
3,010,592	+				-0.3
3,010,592	+				-1.3
3,010,594	+				-0.4
3,010,596	+				-0.1
3,010,615	+				-1.2
3,010,616	-				-4.1
3,010,748	+				-2.0
3,010,751	-				-0.8
3,010,751	-				+0.7
3,010,754	-				-1.8
3,010,896	+		BT2410	0.15	-0.5
3,010,909	+		BT2410	0.17	-0.1
3,010,909	+		BT2410	0.17	+0.4
3,010,919	-		BT2410	0.20	-0.4
3,011,082	+		BT2410	0.53	-1.3
3,011,124	-		BT2410	0.61	-0.7
3,011,143	+		BT2410	0.65	-2.0
3,011,169	-		BT2410	0.70	+2.5
3,011,253	+		BT2410	0.87	-2.1
3,011,254	-		BT2410	0.88	-0.7
3,011,254	-		BT2410	0.88	-0.5
3,011,259	+		BT2410	0.89	-0.4
3,011,348	+				-1.7
3,011,428	+				+0.5
3,011,433	-				+0.8
3,011,433	-				+1.2
3,011,433	-				-0.9
3,011,433	-				-1.1
3,011,433	-				-2.6
3,011,434	+				-0.2
3,011,435	-				-0.1
3,011,441	+				+0.6
3,011,504	-		BT2411	0.14	+1.2
3,011,507	+		BT2411	0.15	-0.0
3,011,508	-		BT2411	0.15	+1.5
3,011,508	-		BT2411	0.15	+0.3
3,011,508	-		BT2411	0.15	-0.4
3,011,711	-		BT2411	0.34	+0.5
3,011,772	-		BT2411	0.40	+0.1
3,011,813	+		BT2411	0.44	+0.4
3,011,813	+		BT2411	0.44	-0.8
3,011,813	+		BT2411	0.44	-1.5
3,011,813	+		BT2411	0.44	-0.3
3,011,813	+		BT2411	0.44	+1.0
3,011,813	+		BT2411	0.44	+0.7
3,011,866	+		BT2411	0.49	+1.7
3,011,988	+		BT2411	0.61	+2.0
3,012,012	-		BT2411	0.63	+0.3
3,012,092	+		BT2411	0.71	-1.1
3,012,092	+		BT2411	0.71	+0.2
3,012,095	-		BT2411	0.71	-2.2
3,012,095	-		BT2411	0.71	-0.3
3,012,106	+		BT2411	0.73	+1.3
3,012,107	-		BT2411	0.73	+0.4
3,012,107	-		BT2411	0.73	-2.4
3,012,153	+		BT2411	0.77	-1.1
3,012,177	-		BT2411	0.79	+0.0
3,012,179	-		BT2411	0.80	-0.0
3,012,255	-		BT2411	0.87	+0.5
3,012,255	-		BT2411	0.87	+0.3