Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1835

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
2,301,568	-		BT1834	0.30	-0.8
2,301,621	-		BT1834	0.33	-1.6
2,301,621	-		BT1834	0.33	-0.4
2,301,622	+		BT1834	0.33	-1.1
2,301,622	+		BT1834	0.33	-1.0
2,301,623	-		BT1834	0.33	-3.1
2,301,693	+		BT1834	0.38	-1.6
2,301,754	-		BT1834	0.42	-1.0
2,301,783	-		BT1834	0.44	-1.5
2,301,816	-		BT1834	0.47	-2.0
2,301,816	-		BT1834	0.47	-1.9
2,301,819	+		BT1834	0.47	-2.6
2,301,820	-		BT1834	0.47	-1.8
2,301,997	-		BT1834	0.59	+0.2
2,302,084	+		BT1834	0.65	+1.6
2,302,087	+		BT1834	0.65	-0.1
2,302,088	-		BT1834	0.65	-2.4
2,302,170	-		BT1834	0.71	-2.9
2,302,187	+		BT1834	0.72	-0.6
2,302,193	-		BT1834	0.73	+0.6
2,302,222	-		BT1834	0.75	-0.4
2,302,278	+		BT1834	0.79	-0.4
2,302,278	+		BT1834	0.79	-0.7
2,302,282	+		BT1834	0.79	-0.5
2,302,406	+		BT1834	0.87	+1.6
2,302,582	-				-2.6
2,302,586	-				-0.0
2,302,642	-				-2.7
2,302,665	-				-0.1
2,302,760	-		BT1835	0.18	-0.0
2,302,766	+		BT1835	0.19	-1.6
2,302,769	+		BT1835	0.19	-2.9
2,302,769	+		BT1835	0.19	-0.8
2,302,928	-		BT1835	0.35	-1.0
2,302,928	-		BT1835	0.35	-3.0
2,302,929	+		BT1835	0.35	+1.2
2,303,213	-		BT1835	0.62	-0.8
2,303,329	-		BT1835	0.73	-2.5
2,303,329	-		BT1835	0.73	+1.1
2,303,331	+		BT1835	0.74	-0.4
2,303,490	-		BT1835	0.89	-2.4
2,303,494	+		BT1835	0.89	-3.8
2,303,614	-				+0.5
2,303,616	-				-1.7
2,303,620	+				-0.8
2,303,713	+				-1.8
2,303,864	+		BT1836	0.18	-3.7
2,303,864	+		BT1836	0.18	-3.4
2,303,865	-		BT1836	0.18	-2.2
2,303,880	+		BT1836	0.19	-2.6
2,303,892	+		BT1836	0.20	+0.2
2,303,911	+		BT1836	0.21	-2.4
2,303,912	-		BT1836	0.21	-0.8
2,303,914	-		BT1836	0.21	-2.0
2,303,922	+		BT1836	0.22	-1.2
2,303,974	+		BT1836	0.26	-1.1
2,304,012	-		BT1836	0.28	-1.0
2,304,064	-		BT1836	0.32	+0.8
2,304,067	+		BT1836	0.32	-0.8
2,304,067	+		BT1836	0.32	-0.5
2,304,092	+		BT1836	0.34	-0.3
2,304,093	-		BT1836	0.34	-2.4
2,304,095	+		BT1836	0.34	+0.3
2,304,133	+		BT1836	0.37	-1.0
2,304,134	-		BT1836	0.37	-1.0
2,304,195	+		BT1836	0.41	-1.0
2,304,196	-		BT1836	0.41	-2.8
2,304,196	-		BT1836	0.41	-1.4
2,304,196	-		BT1836	0.41	-0.4
2,304,196	-		BT1836	0.41	-2.7
2,304,216	+		BT1836	0.43	-1.6
2,304,231	+		BT1836	0.44	-1.8
2,304,232	-		BT1836	0.44	-1.4
2,304,232	-		BT1836	0.44	-1.2
2,304,268	-		BT1836	0.46	-0.4
2,304,274	-		BT1836	0.47	-2.4
2,304,274	-		BT1836	0.47	-0.7
2,304,323	-		BT1836	0.50	-3.1
2,304,323	-		BT1836	0.50	-1.8
2,304,335	-		BT1836	0.51	-0.8
2,304,355	-		BT1836	0.53	-2.8
2,304,500	+		BT1836	0.63	-1.0
2,304,557	+		BT1836	0.67	+0.3
2,304,557	+		BT1836	0.67	-2.4