Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1711

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
2,106,785	+		BT1710	0.21	-2.3
2,106,810	+		BT1710	0.23	-0.6
2,106,852	+		BT1710	0.27	-2.0
2,106,856	+		BT1710	0.27	+1.2
2,106,975	+		BT1710	0.38	-2.2
2,107,039	+		BT1710	0.43	-0.8
2,107,098	+		BT1710	0.49	-2.6
2,107,098	+		BT1710	0.49	+0.9
2,107,100	+		BT1710	0.49	+1.5
2,107,209	+				-1.3
2,107,258	+		BT1710	0.63	-0.5
2,107,318	-		BT1710	0.68	-3.0
2,107,397	+		BT1710	0.76	-2.0
2,107,398	-		BT1710	0.76	-0.8
2,107,420	+		BT1710	0.78	-3.6
2,107,507	+		BT1710	0.85	-0.3
2,107,567	+				-0.8
2,107,622	+				-3.1
2,107,742	+				-3.1
2,107,742	+				-0.2
2,107,775	+		BT1711	0.10	+1.1
2,107,775	+		BT1711	0.10	-1.5
2,107,967	+		BT1711	0.29	-1.4
2,107,967	+		BT1711	0.29	+0.2
2,108,047	+		BT1711	0.37	-0.3
2,108,093	+		BT1711	0.41	+1.1
2,108,162	+		BT1711	0.48	+0.9
2,108,255	+		BT1711	0.57	+2.1
2,108,259	+		BT1711	0.57	+0.7
2,108,354	+		BT1711	0.67	-0.2
2,108,402	+		BT1711	0.71	-0.1
2,108,417	+		BT1711	0.73	-1.2
2,108,420	-		BT1711	0.73	+1.5
2,108,421	+		BT1711	0.73	+0.8
2,108,451	+		BT1711	0.76	-2.6
2,108,452	-		BT1711	0.76	+1.8
2,108,452	-		BT1711	0.76	-2.1
2,108,454	-		BT1711	0.76	-2.2
2,108,496	-		BT1711	0.80	+1.5
2,108,541	-		BT1711	0.85	-1.2
2,108,553	+		BT1711	0.86	-0.4
2,108,564	+		BT1711	0.87	-0.9
2,108,565	-		BT1711	0.87	-0.6
2,108,576	+		BT1711	0.88	-0.6
2,108,612	+				+0.2
2,108,642	+				+2.2
2,108,654	+				+0.9
2,108,654	+				+0.8
2,108,655	-				-0.7
2,108,657	-				+1.3
2,108,659	+				-1.5
2,108,669	+				+0.7
2,108,672	+				+1.2
2,108,673	-				+0.6
2,108,690	-				+0.7
2,108,698	+				-1.6
2,108,806	+				-1.8
2,108,823	+		BT1712	0.11	-0.3
2,108,824	-		BT1712	0.11	-0.8
2,108,825	+		BT1712	0.11	+0.0
2,108,825	+		BT1712	0.11	+0.6
2,108,825	+		BT1712	0.11	+0.1
2,108,825	+		BT1712	0.11	-3.4
2,108,827	+		BT1712	0.11	-0.8
2,108,896	+		BT1712	0.17	-2.3
2,108,911	+		BT1712	0.18	-1.9
2,108,972	+		BT1712	0.24	-0.9
2,109,038	-		BT1712	0.29	-1.7
2,109,101	+		BT1712	0.35	-0.6
2,109,239	+		BT1712	0.46	-2.1
2,109,239	+		BT1712	0.46	+0.5
2,109,268	+		BT1712	0.49	+0.0
2,109,298	+		BT1712	0.51	-1.2
2,109,392	+		BT1712	0.59	+1.0
2,109,400	+		BT1712	0.60	-1.3
2,109,400	+		BT1712	0.60	-1.2
2,109,432	+		BT1712	0.63	-0.3
2,109,439	+		BT1712	0.63	+1.1
2,109,439	+		BT1712	0.63	-0.5
2,109,448	+		BT1712	0.64	-0.9
2,109,449	-		BT1712	0.64	+0.5
2,109,496	+		BT1712	0.68	-1.8
2,109,539	+		BT1712	0.72	-2.1
2,109,539	+		BT1712	0.72	+0.8
2,109,612	+		BT1712	0.78	-2.2
2,109,614	+		BT1712	0.78	+3.2
2,109,614	+		BT1712	0.78	-1.3
2,109,625	+		BT1712	0.79	-1.1
2,109,680	+		BT1712	0.84	-2.1