Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1544

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
1,903,809	+		BT1543	0.47	-2.6
1,903,893	+		BT1543	0.52	-2.2
1,904,267	+		BT1543	0.76	-1.5
1,904,272	-		BT1543	0.76	-0.7
1,904,330	+		BT1543	0.80	-0.5
1,904,367	+		BT1543	0.82	+1.5
1,904,391	+		BT1543	0.84	-0.1
1,904,482	+		BT1543	0.89	-0.5
1,904,483	-		BT1543	0.89	-3.6
1,904,483	-		BT1543	0.89	-0.2
1,904,501	-				-1.3
1,904,532	+				-0.3
1,904,533	-				-0.9
1,904,551	+				-1.2
1,904,579	-				-0.6
1,904,607	-				+3.9
1,904,641	-				+0.7
1,904,652	-				+0.2
1,904,686	-				-1.5
1,904,686	-				-0.7
1,904,688	-				-1.1
1,904,868	+		BT1544	0.16	-1.1
1,904,869	-		BT1544	0.16	-1.8
1,904,869	-		BT1544	0.16	-3.0
1,904,873	+		BT1544	0.17	-0.7
1,904,932	-		BT1544	0.24	-3.8
1,904,950	+		BT1544	0.27	+1.1
1,905,002	-		BT1544	0.33	-1.8
1,905,097	-		BT1544	0.45	-1.2
1,905,185	+		BT1544	0.56	-1.1
1,905,385	+		BT1544	0.82	-1.8
1,905,523	-				+0.0
1,905,647	+		BT1545	0.20	-0.9
1,905,647	+		BT1545	0.20	+0.9
1,905,647	+		BT1545	0.20	-1.3
1,905,782	+		BT1545	0.44	+0.2
1,905,836	+		BT1545	0.53	-4.7
1,905,836	+		BT1545	0.53	-0.9
1,905,839	-		BT1545	0.54	+0.7
1,905,931	+		BT1545	0.70	-0.8
1,905,941	+		BT1545	0.72	-1.7
1,905,959	+		BT1545	0.75	+1.5
1,905,961	+		BT1545	0.76	-1.2
1,905,962	-		BT1545	0.76	-1.7
1,905,996	-		BT1545	0.82	-1.8
1,906,038	+		BT1545	0.89	-1.9
1,906,041	-		BT1545	0.90	+0.5
1,906,113	-				-2.0
1,906,113	-				-1.1
1,906,126	+				-1.3
1,906,230	-				+2.5
1,906,329	+		BT1546	0.10	-2.0
1,906,401	+		BT1546	0.17	-1.5
1,906,428	-		BT1546	0.20	-1.2
1,906,452	+		BT1546	0.23	-1.1
1,906,453	-		BT1546	0.23	+0.6
1,906,463	-		BT1546	0.24	+0.3
1,906,471	+		BT1546	0.24	+1.1
1,906,471	+		BT1546	0.24	+0.2