Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1226

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
1,524,845	+		BT1225	0.73	+1.0
1,524,875	-		BT1225	0.76	+1.5
1,525,180	-				-2.5
1,525,239	-				-1.7
1,525,257	+				+0.3
1,525,264	+				-1.7
1,525,264	+				+2.5
1,525,264	+				+0.7
1,525,448	+				+0.1
1,525,456	+				+0.9
1,525,483	+				-0.8
1,525,483	+				-0.3
1,525,483	+				-0.8
1,525,632	-				-2.1
1,525,673	-				-1.7
1,525,752	-				+0.0
1,525,756	+				+1.8
1,525,757	-				-1.5
1,525,770	+				+4.2
1,525,810	-				+1.5
1,525,830	+				+2.0
1,526,054	+		BT1226	0.19	+2.0
1,526,055	-		BT1226	0.19	+1.4
1,526,136	-		BT1226	0.24	+1.4
1,526,242	-		BT1226	0.31	+1.5
1,526,412	+		BT1226	0.41	-1.5
1,526,413	-		BT1226	0.41	+2.9
1,526,413	-		BT1226	0.41	+0.9
1,526,413	-		BT1226	0.41	-0.9
1,526,413	-		BT1226	0.41	-0.5
1,526,417	-		BT1226	0.41	-0.4
1,526,463	+		BT1226	0.44	+2.7
1,526,463	+		BT1226	0.44	+0.1
1,526,661	-		BT1226	0.56	-0.7
1,526,772	+		BT1226	0.63	+1.5
1,526,815	+		BT1226	0.65	+3.0
1,526,939	+		BT1226	0.73	+0.2
1,526,940	-		BT1226	0.73	+2.7
1,526,953	+		BT1226	0.73	+1.6
1,526,954	-		BT1226	0.73	+1.1
1,526,954	-		BT1226	0.73	+0.7
1,527,140	-		BT1226	0.85	+0.4
1,527,320	+				+1.2
1,527,447	+				+0.3
1,527,464	+				+0.5
1,527,467	+				-0.1
1,527,476	+				-0.8
1,527,602	+		BT1227	0.13	-0.1
1,527,682	-		BT1227	0.20	-1.1
1,527,726	+		BT1227	0.23	-1.4
1,527,783	-		BT1227	0.28	-1.4
1,527,840	+		BT1227	0.33	+2.5
1,527,884	+		BT1227	0.37	+0.5
1,527,884	+		BT1227	0.37	-0.4
1,527,884	+		BT1227	0.37	+2.5
1,528,194	+		BT1227	0.64	-1.4
1,528,244	+		BT1227	0.68	-1.4
1,528,275	+		BT1227	0.71	-0.9
1,528,367	-		BT1227	0.79	-1.5