Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0602 and BT0603 are separated by 143 nucleotides BT0603 and BT0604 are separated by 1 nucleotides
BT0602: BT0602 - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file), at 742,944 to 744,167
BT0602
BT0603: BT0603 - conserved hypothetical protein (NCBI ptt file), at 744,311 to 745,423
BT0603
BT0604: BT0604 - putative coenzyme F420-reducing hydrogenase (NCBI ptt file), at 745,425 to 746,612
BT0604
Position (kb) 744
745
746 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 743.366 kb on - strand, within BT0602 at 743.481 kb on + strand, within BT0602 at 743.573 kb on + strand, within BT0602 at 743.622 kb on - strand, within BT0602 at 743.843 kb on + strand, within BT0602 at 743.954 kb on - strand, within BT0602 at 743.973 kb on + strand, within BT0602 at 744.166 kb on - strand at 744.283 kb on - strand at 744.335 kb on + strand at 744.337 kb on + strand at 744.338 kb on - strand at 744.338 kb on - strand at 744.370 kb on - strand at 744.563 kb on - strand, within BT0603 at 744.631 kb on + strand, within BT0603 at 744.789 kb on + strand, within BT0603 at 744.943 kb on + strand, within BT0603 at 745.202 kb on + strand, within BT0603 at 745.222 kb on + strand, within BT0603 at 745.325 kb on + strand at 745.452 kb on - strand at 745.477 kb on + strand at 745.478 kb on - strand at 745.547 kb on + strand, within BT0604 at 745.547 kb on + strand, within BT0604 at 745.626 kb on - strand, within BT0604 at 745.664 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.683 kb on - strand, within BT0604 at 745.833 kb on - strand, within BT0604 at 745.839 kb on - strand, within BT0604 at 745.860 kb on - strand, within BT0604 at 746.109 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml remove 743,366 - BT0602 0.34 -0.7 743,481 + BT0602 0.44 -1.1 743,573 + BT0602 0.51 -2.1 743,622 - BT0602 0.55 -2.8 743,843 + BT0602 0.73 +0.3 743,954 - BT0602 0.83 -2.7 743,973 + BT0602 0.84 +1.8 744,166 - +0.1 744,283 - -0.2 744,335 + -1.2 744,337 + -1.7 744,338 - +0.8 744,338 - +0.3 744,370 - +1.6 744,563 - BT0603 0.23 -1.7 744,631 + BT0603 0.29 -0.4 744,789 + BT0603 0.43 -0.4 744,943 + BT0603 0.57 -0.7 745,202 + BT0603 0.80 -3.2 745,222 + BT0603 0.82 -1.4 745,325 + -1.4 745,452 - -4.1 745,477 + +1.0 745,478 - -2.0 745,547 + BT0604 0.10 -2.1 745,547 + BT0604 0.10 +0.7 745,626 - BT0604 0.17 -0.4 745,664 + BT0604 0.20 +1.6 745,682 + BT0604 0.22 -2.0 745,682 + BT0604 0.22 +0.9 745,683 - BT0604 0.22 -1.4 745,833 - BT0604 0.34 -1.1 745,839 - BT0604 0.35 -1.0 745,860 - BT0604 0.37 +1.6 746,109 - BT0604 0.58 -1.1 746,167 - BT0604 0.62 -0.7 746,167 - BT0604 0.62 -2.7
Or see this region's nucleotide sequence