Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0596 and BT0597 are separated by 7 nucleotides BT0597 and BT0598 are separated by 53 nucleotides BT0598 and BT0599 are separated by 34 nucleotides
BT0596: BT0596 - putative transcriptional regulator (NCBI ptt file), at 736,175 to 736,753
BT0596
BT0597: BT0597 - conserved hypothetical protein (NCBI ptt file), at 736,761 to 737,114
BT0597
BT0598: BT0598 - putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file), at 737,168 to 739,093
BT0598
BT0599: BT0599 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 739,128 to 740,444
BT0599
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 736.256 kb on + strand, within BT0596 at 736.654 kb on - strand, within BT0596 at 737.536 kb on - strand, within BT0598 at 737.710 kb on + strand, within BT0598 at 738.276 kb on - strand, within BT0598 at 738.289 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.867 kb on - strand, within BT0598 at 739.042 kb on - strand at 739.096 kb on - strand at 739.119 kb on - strand at 739.432 kb on + strand, within BT0599 at 739.432 kb on + strand, within BT0599 at 739.433 kb on - strand, within BT0599 at 739.483 kb on + strand, within BT0599 at 739.533 kb on + strand, within BT0599 at 739.611 kb on - strand, within BT0599 at 739.775 kb on + strand, within BT0599 at 739.829 kb on + strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 740.072 kb on + strand, within BT0599
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml remove 736,256 + BT0596 0.14 -2.0 736,654 - BT0596 0.83 -2.0 737,536 - BT0598 0.19 -1.4 737,710 + BT0598 0.28 +0.0 738,276 - BT0598 0.58 -0.8 738,289 - BT0598 0.58 -1.4 738,311 - BT0598 0.59 -0.2 738,311 - BT0598 0.59 -2.2 738,496 - BT0598 0.69 -1.0 738,496 - BT0598 0.69 -1.5 738,824 - BT0598 0.86 -2.3 738,824 - BT0598 0.86 -2.6 738,867 - BT0598 0.88 -2.4 739,042 - +0.3 739,096 - +0.4 739,119 - -3.5 739,432 + BT0599 0.23 +0.1 739,432 + BT0599 0.23 -1.0 739,433 - BT0599 0.23 +0.5 739,483 + BT0599 0.27 -2.3 739,533 + BT0599 0.31 -0.2 739,611 - BT0599 0.37 +2.1 739,775 + BT0599 0.49 -0.2 739,829 + BT0599 0.53 -0.1 739,833 - BT0599 0.54 -2.3 739,833 - BT0599 0.54 -0.9 739,878 + BT0599 0.57 -1.0 739,878 + BT0599 0.57 -2.3 740,072 + BT0599 0.72 -2.9
Or see this region's nucleotide sequence