Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0533 and BT0534 are separated by 417 nucleotides BT0534 and BT0535 overlap by 48 nucleotides
BT0533: BT0533 - tryptophan synthase beta chain (NCBI ptt file), at 656,402 to 657,586
BT0533
BT0534: BT0534 - hypothetical protein (NCBI ptt file), at 658,004 to 658,210
BT0534
BT0535: BT0535 - iron-containing alcohol dehydrogenase (NCBI ptt file), at 658,163 to 659,308
BT0535
Position (kb) 658
659 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 657.024 kb on + strand, within BT0533 at 657.187 kb on + strand, within BT0533 at 657.212 kb on + strand, within BT0533 at 657.212 kb on + strand, within BT0533 at 657.213 kb on - strand, within BT0533 at 657.331 kb on + strand, within BT0533 at 657.400 kb on - strand, within BT0533 at 657.420 kb on - strand, within BT0533 at 657.488 kb on - strand at 657.555 kb on + strand at 657.687 kb on - strand at 657.700 kb on + strand at 657.703 kb on - strand at 657.704 kb on + strand at 657.708 kb on + strand at 657.725 kb on + strand at 657.743 kb on - strand at 657.926 kb on - strand at 657.944 kb on + strand at 657.964 kb on + strand at 657.995 kb on - strand at 658.019 kb on - strand at 658.115 kb on - strand, within BT0534 at 658.133 kb on + strand, within BT0534 at 658.192 kb on - strand at 658.240 kb on - strand at 658.255 kb on + strand at 658.256 kb on - strand at 658.301 kb on + strand, within BT0535 at 658.302 kb on - strand, within BT0535 at 658.325 kb on - strand, within BT0535 at 658.337 kb on - strand, within BT0535 at 658.428 kb on + strand, within BT0535 at 658.428 kb on + strand, within BT0535 at 658.490 kb on + strand, within BT0535 at 658.635 kb on - strand, within BT0535 at 658.754 kb on + strand, within BT0535 at 658.754 kb on + strand, within BT0535 at 658.822 kb on - strand, within BT0535 at 658.996 kb on + strand, within BT0535 at 658.996 kb on + strand, within BT0535 at 659.009 kb on - strand, within BT0535 at 659.025 kb on + strand, within BT0535 at 659.066 kb on + strand, within BT0535 at 659.134 kb on + strand, within BT0535
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml remove 657,024 + BT0533 0.52 -1.7 657,187 + BT0533 0.66 -3.2 657,212 + BT0533 0.68 -2.3 657,212 + BT0533 0.68 -1.9 657,213 - BT0533 0.68 -2.3 657,331 + BT0533 0.78 -2.1 657,400 - BT0533 0.84 -1.0 657,420 - BT0533 0.86 -0.4 657,488 - -3.1 657,555 + -4.1 657,687 - -4.4 657,700 + -3.4 657,703 - -1.7 657,704 + -2.3 657,708 + -1.7 657,725 + +0.6 657,743 - -0.5 657,926 - -1.6 657,944 + -1.7 657,964 + -1.6 657,995 - -0.7 658,019 - -1.3 658,115 - BT0534 0.54 -0.8 658,133 + BT0534 0.62 +0.9 658,192 - +0.6 658,240 - -0.2 658,255 + -0.5 658,256 - -1.9 658,301 + BT0535 0.12 -4.1 658,302 - BT0535 0.12 -0.1 658,325 - BT0535 0.14 -1.1 658,337 - BT0535 0.15 -0.4 658,428 + BT0535 0.23 -2.0 658,428 + BT0535 0.23 -1.0 658,490 + BT0535 0.29 -0.7 658,635 - BT0535 0.41 -0.7 658,754 + BT0535 0.52 -1.5 658,754 + BT0535 0.52 -1.3 658,822 - BT0535 0.58 -0.7 658,996 + BT0535 0.73 -0.2 658,996 + BT0535 0.73 -1.3 659,009 - BT0535 0.74 -0.5 659,025 + BT0535 0.75 +0.0 659,066 + BT0535 0.79 -0.1 659,134 + BT0535 0.85 -0.8
Or see this region's nucleotide sequence