Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4993 and Psyr_4994 are separated by 213 nucleotides Psyr_4994 and Psyr_4995 are separated by 30 nucleotides Psyr_4995 and Psyr_4996 are separated by 225 nucleotides
Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936
_4993
Psyr_4994: Psyr_4994 - rhs-related protein, at 5,924,150 to 5,924,563
_4994
Psyr_4995: Psyr_4995 - RHS protein, at 5,924,594 to 5,925,109
_4995
Psyr_4996: Psyr_4996 - hypothetical protein, at 5,925,335 to 5,925,952
_4996
Position (kb) 5924
5925
5926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5923.620 kb on + strand, within Psyr_4993 at 5923.655 kb on - strand, within Psyr_4993 at 5923.747 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.844 kb on + strand, within Psyr_4993 at 5923.871 kb on + strand at 5923.953 kb on + strand at 5923.991 kb on + strand at 5924.008 kb on - strand at 5924.437 kb on + strand, within Psyr_4994 at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.848 kb on + strand, within Psyr_4995 at 5924.991 kb on + strand, within Psyr_4995 at 5925.007 kb on + strand, within Psyr_4995 at 5925.012 kb on + strand, within Psyr_4995 at 5925.080 kb on + strand at 5925.080 kb on + strand at 5925.081 kb on - strand at 5925.088 kb on - strand at 5925.091 kb on + strand at 5925.092 kb on - strand at 5925.174 kb on + strand at 5925.175 kb on - strand at 5925.178 kb on - strand at 5925.210 kb on + strand at 5925.220 kb on - strand at 5925.226 kb on - strand at 5925.252 kb on + strand at 5925.253 kb on - strand at 5925.253 kb on - strand at 5925.394 kb on - strand at 5925.482 kb on + strand, within Psyr_4996 at 5925.506 kb on - strand, within Psyr_4996 at 5925.535 kb on + strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.651 kb on - strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.725 kb on + strand, within Psyr_4996 at 5925.728 kb on + strand, within Psyr_4996 at 5925.803 kb on + strand, within Psyr_4996 at 5925.810 kb on - strand, within Psyr_4996 at 5926.010 kb on + strand at 5926.022 kb on - strand at 5926.028 kb on + strand at 5926.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,923,620 + Psyr_4993 0.60 -0.5 5,923,655 - Psyr_4993 0.65 -2.1 5,923,747 + Psyr_4993 0.76 -2.6 5,923,749 + Psyr_4993 0.77 +1.2 5,923,749 + Psyr_4993 0.77 -3.3 5,923,749 + Psyr_4993 0.77 -0.8 5,923,749 + Psyr_4993 0.77 -0.9 5,923,749 + Psyr_4993 0.77 -1.8 5,923,750 - Psyr_4993 0.77 -1.0 5,923,750 - Psyr_4993 0.77 +1.1 5,923,844 + Psyr_4993 0.88 +1.2 5,923,871 + -0.9 5,923,953 + -1.4 5,923,991 + +1.0 5,924,008 - -0.8 5,924,437 + Psyr_4994 0.69 -0.8 5,924,633 + -0.4 5,924,633 + +0.2 5,924,633 + +0.3 5,924,633 + +0.0 5,924,633 + -0.7 5,924,848 + Psyr_4995 0.49 -0.9 5,924,991 + Psyr_4995 0.77 -0.2 5,925,007 + Psyr_4995 0.80 -1.7 5,925,012 + Psyr_4995 0.81 -1.0 5,925,080 + +0.9 5,925,080 + +0.4 5,925,081 - -3.0 5,925,088 - +0.2 5,925,091 + -0.2 5,925,092 - +0.4 5,925,174 + +2.2 5,925,175 - +0.1 5,925,178 - -2.0 5,925,210 + +0.5 5,925,220 - +0.9 5,925,226 - -0.7 5,925,252 + -0.8 5,925,253 - -2.4 5,925,253 - -0.3 5,925,394 - -1.8 5,925,482 + Psyr_4996 0.24 -1.0 5,925,506 - Psyr_4996 0.28 -1.4 5,925,535 + Psyr_4996 0.32 -0.1 5,925,536 - Psyr_4996 0.33 -2.4 5,925,536 - Psyr_4996 0.33 +1.2 5,925,570 - Psyr_4996 0.38 +0.9 5,925,570 - Psyr_4996 0.38 +1.9 5,925,651 - Psyr_4996 0.51 +0.8 5,925,660 + Psyr_4996 0.53 -0.8 5,925,660 + Psyr_4996 0.53 +0.5 5,925,660 + Psyr_4996 0.53 -0.1 5,925,660 + Psyr_4996 0.53 -2.3 5,925,660 + Psyr_4996 0.53 +1.1 5,925,660 + Psyr_4996 0.53 -1.4 5,925,660 + Psyr_4996 0.53 +0.5 5,925,660 + Psyr_4996 0.53 -1.4 5,925,660 + Psyr_4996 0.53 -0.7 5,925,661 - Psyr_4996 0.53 -2.0 5,925,661 - Psyr_4996 0.53 -0.8 5,925,661 - Psyr_4996 0.53 -2.6 5,925,661 - Psyr_4996 0.53 +0.5 5,925,661 - Psyr_4996 0.53 -3.3 5,925,661 - Psyr_4996 0.53 -1.1 5,925,661 - Psyr_4996 0.53 -2.8 5,925,661 - Psyr_4996 0.53 -0.8 5,925,725 + Psyr_4996 0.63 -1.1 5,925,728 + Psyr_4996 0.64 -1.0 5,925,803 + Psyr_4996 0.76 +0.9 5,925,810 - Psyr_4996 0.77 +0.3 5,926,010 + -0.5 5,926,022 - +0.7 5,926,028 + -1.4 5,926,045 - +0.0
Or see this region's nucleotide sequence