Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4944 and Psyr_4945 are separated by 103 nucleotides Psyr_4945 and Psyr_4946 overlap by 4 nucleotides Psyr_4946 and Psyr_4947 are separated by 209 nucleotides Psyr_4947 and Psyr_4948 are separated by 133 nucleotides
Psyr_4944: Psyr_4944 - transcriptional regulator, LysR family, at 5,859,155 to 5,860,036
_4944
Psyr_4945: Psyr_4945 - Formate dehydrogenase, subunit FdhD, at 5,860,140 to 5,860,976
_4945
Psyr_4946: Psyr_4946 - Oxidoreductase alpha (molybdopterin) subunit, at 5,860,973 to 5,863,309
_4946
Psyr_4947: Psyr_4947 - conserved hypothetical protein, at 5,863,519 to 5,863,959
_4947
Psyr_4948: Psyr_4948 - ATP-dependent DNA helicase, RecQ-like protein, at 5,864,093 to 5,866,042
_4948
Position (kb) 5860
5861
5862
5863
5864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5860.026 kb on + strand at 5860.080 kb on + strand at 5860.103 kb on + strand at 5860.104 kb on - strand at 5860.178 kb on + strand at 5860.206 kb on + strand at 5860.206 kb on + strand at 5860.207 kb on - strand at 5860.207 kb on - strand at 5860.212 kb on + strand at 5860.212 kb on + strand at 5860.212 kb on + strand at 5860.213 kb on - strand at 5860.213 kb on - strand at 5860.281 kb on + strand, within Psyr_4945 at 5860.281 kb on + strand, within Psyr_4945 at 5860.281 kb on + strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.290 kb on - strand, within Psyr_4945 at 5860.389 kb on + strand, within Psyr_4945 at 5860.390 kb on - strand, within Psyr_4945 at 5860.390 kb on - strand, within Psyr_4945 at 5860.825 kb on + strand, within Psyr_4945 at 5860.825 kb on + strand, within Psyr_4945 at 5860.826 kb on - strand, within Psyr_4945 at 5860.826 kb on - strand, within Psyr_4945 at 5860.901 kb on + strand at 5860.901 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.949 kb on + strand at 5860.950 kb on - strand at 5860.950 kb on - strand at 5861.015 kb on + strand at 5861.016 kb on - strand at 5861.024 kb on + strand at 5861.025 kb on - strand at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.483 kb on + strand, within Psyr_4946 at 5861.483 kb on + strand, within Psyr_4946 at 5861.484 kb on - strand, within Psyr_4946 at 5861.489 kb on + strand, within Psyr_4946 at 5861.490 kb on - strand, within Psyr_4946 at 5861.490 kb on - strand, within Psyr_4946 at 5861.490 kb on - strand, within Psyr_4946 at 5861.968 kb on - strand, within Psyr_4946 at 5861.976 kb on - strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.065 kb on + strand, within Psyr_4946 at 5862.066 kb on - strand, within Psyr_4946 at 5862.066 kb on - strand, within Psyr_4946 at 5862.066 kb on - strand, within Psyr_4946 at 5862.221 kb on - strand, within Psyr_4946 at 5862.221 kb on - strand, within Psyr_4946 at 5862.221 kb on - strand, within Psyr_4946 at 5862.221 kb on - strand, within Psyr_4946 at 5862.462 kb on + strand, within Psyr_4946 at 5862.731 kb on + strand, within Psyr_4946 at 5862.732 kb on - strand, within Psyr_4946 at 5862.732 kb on - strand, within Psyr_4946 at 5862.816 kb on - strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.975 kb on - strand, within Psyr_4946 at 5862.975 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand at 5863.188 kb on - strand at 5863.370 kb on - strand at 5863.395 kb on - strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.517 kb on - strand at 5863.517 kb on - strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.535 kb on + strand at 5863.536 kb on - strand at 5863.598 kb on + strand, within Psyr_4947 at 5863.729 kb on - strand, within Psyr_4947 at 5863.827 kb on - strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.960 kb on + strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5864.084 kb on + strand at 5864.085 kb on - strand at 5864.085 kb on - strand at 5864.091 kb on - strand at 5864.217 kb on - strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.260 kb on - strand at 5864.260 kb on - strand at 5864.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,860,026 + -0.2 5,860,080 + -1.5 5,860,103 + +1.4 5,860,104 - -0.5 5,860,178 + -0.2 5,860,206 + +0.9 5,860,206 + -0.8 5,860,207 - +0.5 5,860,207 - -1.2 5,860,212 + +1.4 5,860,212 + +0.8 5,860,212 + +2.2 5,860,213 - +2.9 5,860,213 - -0.6 5,860,281 + Psyr_4945 0.17 +0.9 5,860,281 + Psyr_4945 0.17 +0.8 5,860,281 + Psyr_4945 0.17 +0.8 5,860,282 - Psyr_4945 0.17 +0.8 5,860,282 - Psyr_4945 0.17 +1.2 5,860,282 - Psyr_4945 0.17 +0.2 5,860,290 - Psyr_4945 0.18 -0.1 5,860,389 + Psyr_4945 0.30 +1.2 5,860,390 - Psyr_4945 0.30 +1.1 5,860,390 - Psyr_4945 0.30 +1.2 5,860,825 + Psyr_4945 0.82 -1.3 5,860,825 + Psyr_4945 0.82 +0.1 5,860,826 - Psyr_4945 0.82 +0.7 5,860,826 - Psyr_4945 0.82 +0.7 5,860,901 + +0.6 5,860,901 + +0.9 5,860,912 + -1.7 5,860,912 + -0.9 5,860,912 + -0.6 5,860,912 + +0.8 5,860,912 + +0.6 5,860,913 - +0.8 5,860,913 - +2.1 5,860,913 - +0.3 5,860,913 - +2.5 5,860,913 - +0.9 5,860,913 - +0.9 5,860,948 - -2.7 5,860,948 - +0.2 5,860,948 - +0.7 5,860,949 + -0.9 5,860,950 - +1.3 5,860,950 - +0.5 5,861,015 + -0.5 5,861,016 - +1.2 5,861,024 + -0.0 5,861,025 - +1.1 5,861,345 + Psyr_4946 0.16 -0.7 5,861,345 + Psyr_4946 0.16 -0.0 5,861,345 + Psyr_4946 0.16 +0.9 5,861,345 + Psyr_4946 0.16 +0.9 5,861,345 + Psyr_4946 0.16 +0.9 5,861,345 + Psyr_4946 0.16 -1.2 5,861,346 - Psyr_4946 0.16 +0.7 5,861,346 - Psyr_4946 0.16 -0.2 5,861,346 - Psyr_4946 0.16 -0.5 5,861,346 - Psyr_4946 0.16 +0.0 5,861,346 - Psyr_4946 0.16 -0.1 5,861,450 + Psyr_4946 0.20 +0.4 5,861,450 + Psyr_4946 0.20 -0.4 5,861,450 + Psyr_4946 0.20 +1.2 5,861,450 + Psyr_4946 0.20 +1.8 5,861,451 - Psyr_4946 0.20 +1.5 5,861,451 - Psyr_4946 0.20 +0.9 5,861,451 - Psyr_4946 0.20 +1.7 5,861,451 - Psyr_4946 0.20 +0.2 5,861,451 - Psyr_4946 0.20 +0.3 5,861,451 - Psyr_4946 0.20 -1.6 5,861,451 - Psyr_4946 0.20 +1.0 5,861,451 - Psyr_4946 0.20 +0.9 5,861,451 - Psyr_4946 0.20 -0.3 5,861,483 + Psyr_4946 0.22 +1.1 5,861,483 + Psyr_4946 0.22 +0.1 5,861,484 - Psyr_4946 0.22 -0.1 5,861,489 + Psyr_4946 0.22 +0.6 5,861,490 - Psyr_4946 0.22 +0.2 5,861,490 - Psyr_4946 0.22 +0.7 5,861,490 - Psyr_4946 0.22 +0.1 5,861,968 - Psyr_4946 0.43 +1.3 5,861,976 - Psyr_4946 0.43 -0.2 5,862,065 + Psyr_4946 0.47 +1.9 5,862,065 + Psyr_4946 0.47 +0.7 5,862,065 + Psyr_4946 0.47 +0.4 5,862,065 + Psyr_4946 0.47 -0.7 5,862,065 + Psyr_4946 0.47 +1.5 5,862,065 + Psyr_4946 0.47 +0.3 5,862,066 - Psyr_4946 0.47 -0.6 5,862,066 - Psyr_4946 0.47 -0.4 5,862,066 - Psyr_4946 0.47 -0.2 5,862,221 - Psyr_4946 0.53 -2.6 5,862,221 - Psyr_4946 0.53 +1.9 5,862,221 - Psyr_4946 0.53 -0.1 5,862,221 - Psyr_4946 0.53 +0.9 5,862,462 + Psyr_4946 0.64 +0.9 5,862,731 + Psyr_4946 0.75 +0.7 5,862,732 - Psyr_4946 0.75 -0.4 5,862,732 - Psyr_4946 0.75 +0.7 5,862,816 - Psyr_4946 0.79 -1.1 5,862,974 + Psyr_4946 0.86 +0.1 5,862,974 + Psyr_4946 0.86 +2.9 5,862,974 + Psyr_4946 0.86 +0.8 5,862,974 + Psyr_4946 0.86 +1.0 5,862,974 + Psyr_4946 0.86 +0.2 5,862,974 + Psyr_4946 0.86 -2.2 5,862,974 + Psyr_4946 0.86 +0.9 5,862,974 + Psyr_4946 0.86 -0.1 5,862,975 - Psyr_4946 0.86 +1.2 5,862,975 - Psyr_4946 0.86 -0.2 5,862,990 - Psyr_4946 0.86 +1.0 5,862,990 - Psyr_4946 0.86 +0.6 5,862,990 - +0.9 5,863,188 - +1.2 5,863,370 - +1.3 5,863,395 - -0.3 5,863,465 + +0.9 5,863,465 + +0.0 5,863,465 + -1.3 5,863,465 + +1.0 5,863,465 + +1.5 5,863,466 - -0.9 5,863,466 - +2.5 5,863,466 - +1.0 5,863,516 + -0.7 5,863,516 + -0.2 5,863,516 + +1.4 5,863,516 + -0.4 5,863,516 + -0.7 5,863,516 + +1.7 5,863,516 + -0.3 5,863,517 - -1.7 5,863,517 - +1.0 5,863,525 + +0.6 5,863,525 + +0.3 5,863,525 + -2.8 5,863,526 - +0.5 5,863,526 - -0.6 5,863,526 - +1.3 5,863,526 - -0.6 5,863,535 + -0.5 5,863,536 - +0.3 5,863,598 + Psyr_4947 0.18 +0.3 5,863,729 - Psyr_4947 0.48 +1.4 5,863,827 - Psyr_4947 0.70 +0.2 5,863,858 + Psyr_4947 0.77 -2.7 5,863,858 + Psyr_4947 0.77 +2.2 5,863,858 + Psyr_4947 0.77 -0.0 5,863,858 + Psyr_4947 0.77 +0.0 5,863,858 + Psyr_4947 0.77 -0.8 5,863,858 + Psyr_4947 0.77 -0.5 5,863,858 + Psyr_4947 0.77 -0.6 5,863,858 + Psyr_4947 0.77 -0.5 5,863,858 + Psyr_4947 0.77 +1.2 5,863,858 + Psyr_4947 0.77 +1.1 5,863,858 + Psyr_4947 0.77 -0.4 5,863,859 - Psyr_4947 0.77 +0.5 5,863,859 - Psyr_4947 0.77 -0.3 5,863,859 - Psyr_4947 0.77 -0.5 5,863,859 - Psyr_4947 0.77 -1.4 5,863,859 - Psyr_4947 0.77 +0.5 5,863,859 - Psyr_4947 0.77 -0.2 5,863,859 - Psyr_4947 0.77 +1.6 5,863,859 - Psyr_4947 0.77 +1.7 5,863,859 - Psyr_4947 0.77 +1.2 5,863,859 - Psyr_4947 0.77 -0.1 5,863,859 - Psyr_4947 0.77 +1.6 5,863,960 + +0.4 5,863,984 - -1.8 5,863,984 - -2.6 5,863,984 - -1.2 5,864,084 + +0.0 5,864,085 - +0.8 5,864,085 - +1.1 5,864,091 - -0.3 5,864,217 - +1.9 5,864,259 + -0.5 5,864,259 + -0.4 5,864,259 + -0.3 5,864,259 + +1.9 5,864,259 + +0.4 5,864,260 - +2.2 5,864,260 - +1.0 5,864,260 - +0.8
Or see this region's nucleotide sequence