Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4717 and Psyr_4718 are separated by 108 nucleotides Psyr_4718 and Psyr_4719 are separated by 31 nucleotides
Psyr_4717: Psyr_4717 - formyltetrahydrofolate deformylase, at 5,590,242 to 5,591,099
_4717
Psyr_4718: Psyr_4718 - glutathione-independent formaldehyde dehydrogenase, at 5,591,208 to 5,592,407
_4718
Psyr_4719: Psyr_4719 - hypothetical protein, at 5,592,439 to 5,593,485
_4719
Position (kb) 5591
5592
5593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5590.224 kb on + strand at 5590.224 kb on + strand at 5590.241 kb on + strand at 5590.242 kb on - strand at 5590.242 kb on - strand at 5590.242 kb on - strand at 5590.242 kb on - strand at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.516 kb on + strand, within Psyr_4717 at 5590.516 kb on + strand, within Psyr_4717 at 5590.516 kb on + strand, within Psyr_4717 at 5590.517 kb on - strand, within Psyr_4717 at 5590.517 kb on - strand, within Psyr_4717 at 5590.574 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.663 kb on - strand, within Psyr_4717 at 5590.663 kb on - strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.872 kb on + strand, within Psyr_4717 at 5590.872 kb on + strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5591.097 kb on + strand at 5591.128 kb on + strand at 5591.170 kb on + strand at 5591.170 kb on + strand at 5591.170 kb on + strand at 5591.171 kb on - strand at 5591.189 kb on + strand at 5591.189 kb on + strand at 5591.189 kb on + strand at 5591.190 kb on - strand at 5591.190 kb on - strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.227 kb on + strand at 5591.227 kb on + strand at 5591.227 kb on + strand at 5591.227 kb on + strand at 5591.228 kb on - strand at 5591.232 kb on + strand at 5591.232 kb on + strand at 5591.232 kb on + strand at 5591.233 kb on - strand at 5591.233 kb on - strand at 5591.369 kb on - strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.996 kb on - strand, within Psyr_4718 at 5591.996 kb on - strand, within Psyr_4718 at 5592.076 kb on + strand, within Psyr_4718 at 5592.077 kb on - strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.292 kb on + strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.405 kb on + strand at 5592.419 kb on - strand at 5592.440 kb on + strand at 5592.440 kb on + strand at 5592.440 kb on + strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.596 kb on + strand, within Psyr_4719 at 5592.596 kb on + strand, within Psyr_4719 at 5592.612 kb on + strand, within Psyr_4719 at 5592.612 kb on + strand, within Psyr_4719 at 5592.614 kb on + strand, within Psyr_4719 at 5592.614 kb on + strand, within Psyr_4719 at 5592.642 kb on - strand, within Psyr_4719 at 5592.712 kb on - strand, within Psyr_4719 at 5592.724 kb on - strand, within Psyr_4719 at 5592.844 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.931 kb on + strand, within Psyr_4719 at 5592.972 kb on + strand, within Psyr_4719 at 5593.022 kb on + strand, within Psyr_4719 at 5593.071 kb on + strand at 5593.093 kb on - strand, within Psyr_4719 at 5593.093 kb on - strand, within Psyr_4719 at 5593.121 kb on + strand, within Psyr_4719 at 5593.121 kb on + strand, within Psyr_4719 at 5593.122 kb on - strand, within Psyr_4719 at 5593.122 kb on - strand, within Psyr_4719 at 5593.209 kb on - strand, within Psyr_4719 at 5593.329 kb on + strand, within Psyr_4719 at 5593.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,590,224 + -2.2 5,590,224 + +0.1 5,590,241 + -0.6 5,590,242 - +0.5 5,590,242 - -3.1 5,590,242 - -2.2 5,590,242 - -0.2 5,590,341 + Psyr_4717 0.12 -1.6 5,590,341 + Psyr_4717 0.12 +0.0 5,590,341 + Psyr_4717 0.12 -0.8 5,590,341 + Psyr_4717 0.12 +0.3 5,590,341 + Psyr_4717 0.12 -0.3 5,590,341 + Psyr_4717 0.12 -0.3 5,590,342 - Psyr_4717 0.12 -0.6 5,590,342 - Psyr_4717 0.12 -1.8 5,590,342 - Psyr_4717 0.12 +1.0 5,590,342 - Psyr_4717 0.12 +1.1 5,590,516 + Psyr_4717 0.32 -0.6 5,590,516 + Psyr_4717 0.32 +2.1 5,590,516 + Psyr_4717 0.32 +0.7 5,590,517 - Psyr_4717 0.32 -0.2 5,590,517 - Psyr_4717 0.32 -0.3 5,590,574 + Psyr_4717 0.39 +0.3 5,590,655 + Psyr_4717 0.48 -0.1 5,590,655 + Psyr_4717 0.48 +1.6 5,590,656 - Psyr_4717 0.48 +0.4 5,590,656 - Psyr_4717 0.48 -0.4 5,590,656 - Psyr_4717 0.48 +2.5 5,590,659 + Psyr_4717 0.49 +0.3 5,590,659 + Psyr_4717 0.49 +0.3 5,590,659 + Psyr_4717 0.49 +0.4 5,590,659 + Psyr_4717 0.49 -3.1 5,590,659 + Psyr_4717 0.49 -0.4 5,590,660 - Psyr_4717 0.49 -0.9 5,590,660 - Psyr_4717 0.49 -2.1 5,590,660 - Psyr_4717 0.49 +0.4 5,590,660 - Psyr_4717 0.49 -1.4 5,590,660 - Psyr_4717 0.49 +0.1 5,590,660 - Psyr_4717 0.49 -2.0 5,590,662 + Psyr_4717 0.49 +0.2 5,590,662 + Psyr_4717 0.49 -1.1 5,590,662 + Psyr_4717 0.49 -0.1 5,590,663 - Psyr_4717 0.49 -0.5 5,590,663 - Psyr_4717 0.49 -1.2 5,590,761 + Psyr_4717 0.60 -0.0 5,590,872 + Psyr_4717 0.73 -0.8 5,590,872 + Psyr_4717 0.73 -0.2 5,590,873 - Psyr_4717 0.74 -3.3 5,590,873 - Psyr_4717 0.74 -0.2 5,590,911 + Psyr_4717 0.78 -1.8 5,590,911 + Psyr_4717 0.78 -0.6 5,590,911 + Psyr_4717 0.78 +0.7 5,590,911 + Psyr_4717 0.78 -1.0 5,590,912 - Psyr_4717 0.78 +0.2 5,590,912 - Psyr_4717 0.78 +1.5 5,591,097 + -0.4 5,591,128 + +0.2 5,591,170 + +2.6 5,591,170 + -1.0 5,591,170 + -0.6 5,591,171 - +0.1 5,591,189 + +0.7 5,591,189 + +1.0 5,591,189 + +0.8 5,591,190 - +0.9 5,591,190 - +0.8 5,591,207 + +0.3 5,591,207 + -1.8 5,591,207 + +0.6 5,591,207 + +2.4 5,591,207 + -0.4 5,591,207 + -0.7 5,591,207 + +0.3 5,591,207 + -0.1 5,591,207 + +3.1 5,591,207 + -0.4 5,591,207 + -1.3 5,591,207 + -0.1 5,591,207 + +0.8 5,591,207 + +0.1 5,591,207 + -1.5 5,591,207 + +1.3 5,591,207 + -0.2 5,591,207 + -0.8 5,591,207 + -0.6 5,591,207 + +0.6 5,591,207 + -0.4 5,591,207 + -0.7 5,591,207 + -0.9 5,591,207 + +2.0 5,591,207 + +0.3 5,591,207 + -0.6 5,591,207 + -0.0 5,591,207 + -1.3 5,591,207 + +0.2 5,591,207 + -0.3 5,591,207 + -1.3 5,591,207 + -0.2 5,591,207 + -0.2 5,591,207 + -0.5 5,591,207 + +1.4 5,591,207 + +0.4 5,591,207 + -0.2 5,591,207 + -1.8 5,591,207 + -2.0 5,591,207 + +0.4 5,591,207 + +1.1 5,591,207 + +0.8 5,591,207 + -0.5 5,591,208 - -0.6 5,591,208 - +0.5 5,591,208 - -3.4 5,591,208 - +2.1 5,591,208 - -1.6 5,591,208 - +0.5 5,591,208 - -0.0 5,591,208 - +0.6 5,591,208 - -0.4 5,591,208 - +1.5 5,591,208 - -1.1 5,591,208 - +0.4 5,591,208 - -0.4 5,591,208 - -0.9 5,591,208 - +0.2 5,591,208 - +0.1 5,591,208 - -1.3 5,591,208 - +0.1 5,591,208 - +1.0 5,591,208 - -1.8 5,591,208 - -0.2 5,591,208 - +0.4 5,591,208 - +0.5 5,591,208 - -0.2 5,591,208 - +0.3 5,591,208 - +1.9 5,591,208 - -0.7 5,591,208 - +2.4 5,591,208 - -1.2 5,591,208 - +1.0 5,591,208 - +0.4 5,591,208 - -1.9 5,591,208 - -0.8 5,591,208 - -0.4 5,591,208 - -0.8 5,591,208 - +0.4 5,591,208 - +0.9 5,591,208 - +1.6 5,591,208 - +0.8 5,591,208 - -0.2 5,591,208 - -0.5 5,591,227 + +0.3 5,591,227 + -0.1 5,591,227 + +0.2 5,591,227 + +1.2 5,591,228 - -1.6 5,591,232 + +0.9 5,591,232 + -0.3 5,591,232 + -0.9 5,591,233 - +0.4 5,591,233 - +1.0 5,591,369 - Psyr_4718 0.13 +0.6 5,591,577 + Psyr_4718 0.31 -0.4 5,591,577 + Psyr_4718 0.31 +0.8 5,591,577 + Psyr_4718 0.31 +1.0 5,591,577 + Psyr_4718 0.31 -1.1 5,591,577 + Psyr_4718 0.31 -1.2 5,591,583 + Psyr_4718 0.31 -1.9 5,591,583 + Psyr_4718 0.31 +1.1 5,591,583 + Psyr_4718 0.31 +0.2 5,591,583 + Psyr_4718 0.31 -0.8 5,591,584 - Psyr_4718 0.31 +0.8 5,591,584 - Psyr_4718 0.31 +0.2 5,591,584 - Psyr_4718 0.31 +1.0 5,591,584 - Psyr_4718 0.31 +0.4 5,591,584 - Psyr_4718 0.31 +0.3 5,591,622 + Psyr_4718 0.34 +0.8 5,591,622 + Psyr_4718 0.34 +0.7 5,591,622 + Psyr_4718 0.34 +1.5 5,591,622 + Psyr_4718 0.34 +0.9 5,591,622 + Psyr_4718 0.34 -1.1 5,591,622 + Psyr_4718 0.34 -0.8 5,591,623 - Psyr_4718 0.35 +1.6 5,591,623 - Psyr_4718 0.35 +2.1 5,591,623 - Psyr_4718 0.35 -0.6 5,591,778 + Psyr_4718 0.47 +0.3 5,591,778 + Psyr_4718 0.47 +0.9 5,591,778 + Psyr_4718 0.47 +1.2 5,591,778 + Psyr_4718 0.47 +1.4 5,591,778 + Psyr_4718 0.47 -1.1 5,591,779 - Psyr_4718 0.48 -0.0 5,591,996 - Psyr_4718 0.66 -1.3 5,591,996 - Psyr_4718 0.66 -0.5 5,592,076 + Psyr_4718 0.72 -0.3 5,592,077 - Psyr_4718 0.72 -0.2 5,592,114 + Psyr_4718 0.76 -0.2 5,592,114 + Psyr_4718 0.76 +0.7 5,592,114 + Psyr_4718 0.76 -0.9 5,592,115 - Psyr_4718 0.76 +1.3 5,592,115 - Psyr_4718 0.76 +1.8 5,592,115 - Psyr_4718 0.76 -0.5 5,592,115 - Psyr_4718 0.76 -0.1 5,592,115 - Psyr_4718 0.76 +1.6 5,592,115 - Psyr_4718 0.76 -0.7 5,592,115 - Psyr_4718 0.76 -1.5 5,592,237 + Psyr_4718 0.86 +0.0 5,592,237 + Psyr_4718 0.86 +1.3 5,592,237 + Psyr_4718 0.86 +0.9 5,592,238 - Psyr_4718 0.86 -1.2 5,592,238 - Psyr_4718 0.86 +0.4 5,592,238 - Psyr_4718 0.86 +1.5 5,592,238 - Psyr_4718 0.86 -0.6 5,592,238 - Psyr_4718 0.86 +1.1 5,592,292 + -1.2 5,592,293 - +1.7 5,592,293 - -2.5 5,592,293 - -0.2 5,592,293 - +0.4 5,592,405 + +0.6 5,592,419 - -1.3 5,592,440 + -2.2 5,592,440 + -0.1 5,592,440 + -0.2 5,592,441 - +0.3 5,592,441 - +0.6 5,592,441 - -0.7 5,592,441 - -0.9 5,592,441 - -0.2 5,592,596 + Psyr_4719 0.15 -0.3 5,592,596 + Psyr_4719 0.15 +0.2 5,592,612 + Psyr_4719 0.17 +0.1 5,592,612 + Psyr_4719 0.17 +0.7 5,592,614 + Psyr_4719 0.17 -0.1 5,592,614 + Psyr_4719 0.17 -0.8 5,592,642 - Psyr_4719 0.19 +0.3 5,592,712 - Psyr_4719 0.26 -0.3 5,592,724 - Psyr_4719 0.27 +1.0 5,592,844 - Psyr_4719 0.39 +0.4 5,592,848 - Psyr_4719 0.39 -0.9 5,592,848 - Psyr_4719 0.39 -0.5 5,592,848 - Psyr_4719 0.39 +0.3 5,592,931 + Psyr_4719 0.47 +0.4 5,592,972 + Psyr_4719 0.51 +1.8 5,593,022 + Psyr_4719 0.56 +0.3 5,593,071 + -1.2 5,593,093 - Psyr_4719 0.62 +0.2 5,593,093 - Psyr_4719 0.62 -0.6 5,593,121 + Psyr_4719 0.65 -1.2 5,593,121 + Psyr_4719 0.65 -0.5 5,593,122 - Psyr_4719 0.65 +2.8 5,593,122 - Psyr_4719 0.65 -0.8 5,593,209 - Psyr_4719 0.74 -1.5 5,593,329 + Psyr_4719 0.85 +1.3 5,593,399 - -0.4
Or see this region's nucleotide sequence