Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4388 and Psyr_4389 are separated by 42 nucleotides Psyr_4389 and Psyr_4390 are separated by 331 nucleotides Psyr_4390 and Psyr_4391 are separated by 20 nucleotides
Psyr_4388: Psyr_4388 - Response regulator receiver, at 5,250,760 to 5,251,167
_4388
Psyr_4389: Psyr_4389 - Flp/Fap pilin component, at 5,251,210 to 5,251,416
_4389
Psyr_4390: Psyr_4390 - Flp pilus assembly CpaB, at 5,251,748 to 5,252,707
_4390
Psyr_4391: Psyr_4391 - type II and III secretion system protein, at 5,252,728 to 5,253,978
_4391
Position (kb) 5251
5252
5253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.827 kb on + strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5251.173 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.200 kb on + strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.204 kb on - strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.216 kb on + strand at 5251.221 kb on + strand at 5251.221 kb on + strand at 5251.224 kb on + strand at 5251.245 kb on + strand, within Psyr_4389 at 5251.245 kb on + strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.246 kb on - strand, within Psyr_4389 at 5251.300 kb on + strand, within Psyr_4389 at 5251.318 kb on + strand, within Psyr_4389 at 5251.331 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.481 kb on - strand at 5251.541 kb on + strand at 5251.581 kb on - strand at 5251.606 kb on - strand at 5251.608 kb on - strand at 5251.642 kb on + strand at 5251.642 kb on + strand at 5251.642 kb on + strand at 5251.653 kb on - strand at 5251.653 kb on - strand at 5251.676 kb on + strand at 5251.679 kb on + strand at 5251.679 kb on + strand at 5251.679 kb on + strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.811 kb on + strand at 5251.811 kb on + strand at 5251.812 kb on - strand at 5251.973 kb on + strand, within Psyr_4390 at 5251.973 kb on + strand, within Psyr_4390 at 5251.973 kb on + strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5252.222 kb on + strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390 at 5252.522 kb on + strand, within Psyr_4390 at 5252.650 kb on + strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.651 kb on - strand at 5252.751 kb on + strand at 5252.751 kb on + strand at 5252.751 kb on + strand at 5252.752 kb on - strand at 5252.752 kb on - strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.753 kb on + strand at 5252.754 kb on - strand at 5252.754 kb on - strand at 5252.754 kb on - strand at 5253.183 kb on + strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.490 kb on - strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.503 kb on - strand, within Psyr_4391
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,250,827 + Psyr_4388 0.16 +1.1 5,250,827 + Psyr_4388 0.16 -0.4 5,250,827 + Psyr_4388 0.16 -0.8 5,250,827 + Psyr_4388 0.16 +0.0 5,250,827 + Psyr_4388 0.16 -0.6 5,250,828 - Psyr_4388 0.17 -0.3 5,250,828 - Psyr_4388 0.17 -0.5 5,250,828 - Psyr_4388 0.17 +0.1 5,251,173 + -0.0 5,251,200 + -0.4 5,251,200 + -0.3 5,251,200 + -1.0 5,251,200 + -0.1 5,251,200 + -1.2 5,251,201 - -0.0 5,251,201 - +0.7 5,251,201 - -0.8 5,251,204 - +0.1 5,251,211 + +1.8 5,251,211 + -2.0 5,251,211 + -0.4 5,251,211 + -0.3 5,251,211 + -2.0 5,251,212 - -0.2 5,251,212 - -0.7 5,251,212 - -1.3 5,251,216 + -2.5 5,251,221 + -1.7 5,251,221 + +0.8 5,251,224 + +0.3 5,251,245 + Psyr_4389 0.17 +1.0 5,251,245 + Psyr_4389 0.17 -1.4 5,251,246 - Psyr_4389 0.17 -1.3 5,251,246 - Psyr_4389 0.17 -0.6 5,251,246 - Psyr_4389 0.17 +2.2 5,251,246 - Psyr_4389 0.17 +1.8 5,251,300 + Psyr_4389 0.43 -1.6 5,251,318 + Psyr_4389 0.52 -0.4 5,251,331 + Psyr_4389 0.58 +1.2 5,251,385 + Psyr_4389 0.85 +0.3 5,251,385 + Psyr_4389 0.85 -0.4 5,251,385 + Psyr_4389 0.85 -0.9 5,251,385 + Psyr_4389 0.85 -2.0 5,251,386 - Psyr_4389 0.85 +0.8 5,251,386 - Psyr_4389 0.85 +0.8 5,251,386 - Psyr_4389 0.85 -2.8 5,251,386 - Psyr_4389 0.85 +0.2 5,251,386 - Psyr_4389 0.85 +0.6 5,251,386 - Psyr_4389 0.85 +2.4 5,251,397 + -1.9 5,251,397 + +0.2 5,251,397 + +0.1 5,251,397 + -2.6 5,251,397 + +0.6 5,251,397 + +0.5 5,251,397 + -1.3 5,251,398 - -0.6 5,251,398 - -2.0 5,251,398 - -0.1 5,251,398 - -0.0 5,251,398 - +0.7 5,251,398 - -0.4 5,251,398 - -1.8 5,251,465 + -2.3 5,251,465 + -0.1 5,251,465 + -0.8 5,251,465 + +0.8 5,251,465 + +0.1 5,251,465 + +2.4 5,251,465 + +0.3 5,251,466 - +0.1 5,251,466 - +0.1 5,251,466 - +0.8 5,251,466 - +0.3 5,251,466 - -0.9 5,251,466 - +1.6 5,251,466 - +1.1 5,251,467 + +1.0 5,251,467 + -0.0 5,251,468 - +1.8 5,251,468 - -0.7 5,251,468 - +1.2 5,251,468 - +0.5 5,251,468 - +2.8 5,251,468 - -2.1 5,251,481 - +0.5 5,251,541 + -3.2 5,251,581 - -0.3 5,251,606 - +0.1 5,251,608 - +1.8 5,251,642 + -1.5 5,251,642 + -1.1 5,251,642 + +0.4 5,251,653 - -0.8 5,251,653 - +2.4 5,251,676 + +0.3 5,251,679 + +1.3 5,251,679 + -0.8 5,251,679 + +0.8 5,251,680 - +0.0 5,251,680 - +1.3 5,251,680 - +0.2 5,251,811 + -0.0 5,251,811 + +1.1 5,251,812 - +0.2 5,251,973 + Psyr_4390 0.23 -0.4 5,251,973 + Psyr_4390 0.23 -0.4 5,251,973 + Psyr_4390 0.23 +0.2 5,251,974 - Psyr_4390 0.24 +2.2 5,251,974 - Psyr_4390 0.24 -0.2 5,252,222 + Psyr_4390 0.49 -1.9 5,252,223 - Psyr_4390 0.49 +0.4 5,252,232 + Psyr_4390 0.50 -0.6 5,252,232 + Psyr_4390 0.50 -2.3 5,252,232 + Psyr_4390 0.50 -0.3 5,252,232 + Psyr_4390 0.50 -1.2 5,252,232 + Psyr_4390 0.50 -1.6 5,252,233 - Psyr_4390 0.51 -0.4 5,252,233 - Psyr_4390 0.51 -0.6 5,252,233 - Psyr_4390 0.51 +0.9 5,252,233 - Psyr_4390 0.51 -0.7 5,252,233 - Psyr_4390 0.51 -1.8 5,252,241 - Psyr_4390 0.51 +0.5 5,252,241 - Psyr_4390 0.51 -0.5 5,252,241 - Psyr_4390 0.51 -0.4 5,252,241 - Psyr_4390 0.51 -1.7 5,252,241 - Psyr_4390 0.51 -1.3 5,252,522 + Psyr_4390 0.81 -0.0 5,252,650 + +1.3 5,252,651 - -0.8 5,252,651 - -1.6 5,252,651 - -2.2 5,252,651 - +0.6 5,252,751 + +0.1 5,252,751 + +1.2 5,252,751 + -0.4 5,252,752 - -2.2 5,252,752 - +0.2 5,252,753 + -1.2 5,252,753 + +1.7 5,252,753 + -1.2 5,252,753 + +0.0 5,252,753 + +0.4 5,252,753 + +0.1 5,252,753 + -0.2 5,252,754 - +2.1 5,252,754 - -2.0 5,252,754 - +0.4 5,253,183 + Psyr_4391 0.36 -0.4 5,253,386 - Psyr_4391 0.53 -0.1 5,253,386 - Psyr_4391 0.53 -0.1 5,253,490 - Psyr_4391 0.61 +1.1 5,253,502 + Psyr_4391 0.62 -1.2 5,253,502 + Psyr_4391 0.62 -1.3 5,253,502 + Psyr_4391 0.62 -1.0 5,253,502 + Psyr_4391 0.62 -0.3 5,253,503 - Psyr_4391 0.62 -1.3
Or see this region's nucleotide sequence